Literature DB >> 15502303

Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli.

Prasenjit Bhaumik1, M Kristian Koski, Ulrich Bergmann, Rik K Wierenga.   

Abstract

Escherichia coli argininosuccinate lyase has been crystallized from a highly concentrated sample of purified recombinant alpha-methylacyl-CoA racemase, in which it occurred as a minor impurity. The structure has been solved using molecular replacement at 2.44 A resolution. The enzyme is tetrameric, but in this crystal form there is a dimer in the asymmetric unit. The tetramer has four active sites; each active site is constructed from loops of three different subunits. One of these catalytic loops, near residues Ser277 and Ser278, was disordered in previous structures of active lyases, but is very well ordered in this structure in one of the subunits owing to the presence of two phosphate ions in the active-site cavity. The positions of these phosphate ions indicate a plausible mode of binding of the succinate moiety of the substrate in the competent catalytic complex.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15502303     DOI: 10.1107/S0907444904021912

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  10 in total

1.  Cloning, expression, purification, crystallization and preliminary X-ray studies of argininosuccinate lyase (Rv1659) from Mycobacterium tuberculosis.

Authors:  A Paul; A Mishra; A Surolia; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-29

2.  Crystallization and preliminary X-ray analysis of argininosuccinate lyase from Streptococcus mutans.

Authors:  Yan-Li Cao; Gui-Lan Li; Kai-Tuo Wang; Hong-Yin Zhang; Lan-Fen Li
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-25

3.  Identification, structure determination and analysis of Mycobacterium smegmatis acyl-carrier protein synthase (AcpS) crystallized serendipitously.

Authors:  Indu Bhatia; Savita Yadav; Bichitra K Biswal
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-06-15       Impact factor: 1.072

4.  Arginine inhibition of the argininosuccinate lyases is conserved among three orders in cyanobacteria.

Authors:  Noriaki Katayama; Takashi Osanai
Journal:  Plant Mol Biol       Date:  2022-05-18       Impact factor: 4.335

5.  The effect of N-terminal truncation on double-dimer assembly of goose delta-crystallin.

Authors:  Hwei-Jen Lee; Young-Hsang Lai; Su-Ying Wu; Yu-Hou Chen
Journal:  Biochem J       Date:  2005-12-15       Impact factor: 3.857

6.  Molecular characterization of argininosuccinate synthase and argininosuccinate lyase from the liver of the African lungfish Protopterus annectens, and their mRNA expression levels in the liver, kidney, brain and skeletal muscle during aestivation.

Authors:  You R Chng; Jasmine L Y Ong; Biyun Ching; Xiu L Chen; Wai P Wong; Shit F Chew; Yuen K Ip
Journal:  J Comp Physiol B       Date:  2014-07-18       Impact factor: 2.200

7.  Substrate and product complexes of Escherichia coli adenylosuccinate lyase provide new insights into the enzymatic mechanism.

Authors:  May Tsai; Jason Koo; Patrick Yip; Roberta F Colman; Mark L Segall; P Lynne Howell
Journal:  J Mol Biol       Date:  2007-05-04       Impact factor: 5.469

8.  Coenzyme M biosynthesis in bacteria involves phosphate elimination by a functionally distinct member of the aspartase/fumarase superfamily.

Authors:  Sarah E Partovi; Florence Mus; Andrew E Gutknecht; Hunter A Martinez; Brian P Tripet; Bernd Markus Lange; Jennifer L DuBois; John W Peters
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

9.  The structure of phosphate-bound Escherichia coli adenylosuccinate lyase identifies His171 as a catalytic acid.

Authors:  Guennadi Kozlov; Long Nguyen; Jessica Pearsall; Kalle Gehring
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-08-20

10.  Metabolic Alterations in a Drosophila Model of Parkinson's Disease Based on DJ-1 Deficiency.

Authors:  Cristina Solana-Manrique; Francisco José Sanz; Isabel Torregrosa; Martina Palomino-Schätzlein; Carolina Hernández-Oliver; Antonio Pineda-Lucena; Nuria Paricio
Journal:  Cells       Date:  2022-01-20       Impact factor: 6.600

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.