Literature DB >> 15501511

SignalML: metaformat for description of biomedical time series.

Piotr J Durka1, Dobiesław Ircha.   

Abstract

This paper introduces a complete and elegant solution to the problem of inherent incompatibility of different formats used for digital storage of biomedical time series (in particular EEG) and their annotations. We define a simple XML-based language, in which information on the structure of binary data files can be simply and efficiently coded. In most cases, description of an existing format takes relatively few lines of XML code. Once written, this information can be used by any software, which, owing to this meta-description, may read the original data files, thus eliminating the need for conversions and duplication of data. This proposition is hereby submitted to an open discussion within the community involved in relevant research, clinical and commercial applications. Links to the current version of the XML Schema defining the language and pilot implementation of a compliant viewer/annotator are located at http://eeg.pl/SignalML/.

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Year:  2004        PMID: 15501511     DOI: 10.1016/j.cmpb.2004.05.007

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  5 in total

1.  On the robust parametric detection of EEG artifacts in polysomnographic recordings.

Authors:  H Klekowicz; U Malinowska; A J Piotrowska; D Wołyńczyk-Gmaj; Sz Niemcewicz; P J Durka
Journal:  Neuroinformatics       Date:  2009-03-24

2.  A Bottom-up Approach to Data Annotation in Neurophysiology.

Authors:  Jan Grewe; Thomas Wachtler; Jan Benda
Journal:  Front Neuroinform       Date:  2011-08-30       Impact factor: 4.081

3.  Neo: an object model for handling electrophysiology data in multiple formats.

Authors:  Samuel Garcia; Domenico Guarino; Florent Jaillet; Todd Jennings; Robert Pröpper; Philipp L Rautenberg; Chris C Rodgers; Andrey Sobolev; Thomas Wachtler; Pierre Yger; Andrew P Davison
Journal:  Front Neuroinform       Date:  2014-02-20       Impact factor: 4.081

Review 4.  Project, toolkit, and database of neuroinformatics ecosystem: A summary of previous studies on "Frontiers in Neuroinformatics".

Authors:  Xin Li; Huadong Liang
Journal:  Front Neuroinform       Date:  2022-09-26       Impact factor: 3.739

5.  NSDF: Neuroscience Simulation Data Format.

Authors:  Subhasis Ray; Chaitanya Chintaluri; Upinder S Bhalla; Daniel K Wójcik
Journal:  Neuroinformatics       Date:  2016-04
  5 in total

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