Literature DB >> 15496555

Evolutionary history of chromosome 20.

Doriana Misceo1, Maria Francesca Cardone, Lucia Carbone, Pietro D'Addabbo, Pieter J de Jong, Mariano Rocchi, Nicoletta Archidiacono.   

Abstract

The evolutionary history of human chromosome 20 in primates was investigated using a panel of human BAC/PAC probes spaced along the chromosome. Oligonucleotide primers derived from the sequence of each human clone were used to screen horse, cat, pig, and black lemur BAC libraries to assemble, for each species, a panel of probes mapping to chromosomal loci orthologous to the loci encompassed by the human BACs. This approach facilitated marker-order comparison aimed at defining marker arrangement in primate ancestor. To this goal, we also took advantage of the mouse and rat draft sequences. The almost perfect colinearity of chromosome 20 sequence in humans and mouse could be interpreted as evidence that their form was ancestral to primates. Contrary to this view, we found that horse, macaque, and two New World monkeys share the same marker-order arrangement from which the human and mouse forms can be derived, assuming similar but distinct inversions that fully account for the small difference in marker arrangement between humans and mouse. The evolutionary history of this chromosome unveiled also two centromere repositioning events in New World monkey species.

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Year:  2004        PMID: 15496555     DOI: 10.1093/molbev/msi021

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  12 in total

1.  Low rate of genomic repatterning in Xenarthra inferred from chromosome painting data.

Authors:  G Dobigny; F Yang; P C M O'Brien; V Volobouev; A Kovács; J C Pieczarka; M A Ferguson-Smith; T J Robinson
Journal:  Chromosome Res       Date:  2005-10-24       Impact factor: 5.239

2.  New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset.

Authors:  A Cellamare; C R Catacchio; C Alkan; G Giannuzzi; F Antonacci; M F Cardone; G Della Valle; M Malig; M Rocchi; E E Eichler; M Ventura
Journal:  Mol Biol Evol       Date:  2009-05-08       Impact factor: 16.240

3.  Eight million years of maintained heterozygosity in chromosome homologs of cercopithecine monkeys.

Authors:  Doron Tolomeo; Oronzo Capozzi; Giorgia Chiatante; Luca Sineo; Takafumi Ishida; Nicoletta Archidiacono; Mariano Rocchi; Roscoe Stanyon
Journal:  Chromosoma       Date:  2020-01-10       Impact factor: 4.316

4.  Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage.

Authors:  Katherine Amps; Peter W Andrews; George Anyfantis; Lyle Armstrong; Stuart Avery; Hossein Baharvand; Julie Baker; Duncan Baker; Maria B Munoz; Stephen Beil; Nissim Benvenisty; Dalit Ben-Yosef; Juan-Carlos Biancotti; Alexis Bosman; Romulo Martin Brena; Daniel Brison; Gunilla Caisander; María V Camarasa; Jieming Chen; Eric Chiao; Young Min Choi; Andre B H Choo; Daniel Collins; Alan Colman; Jeremy M Crook; George Q Daley; Anne Dalton; Paul A De Sousa; Chris Denning; Janet Downie; Petr Dvorak; Karen D Montgomery; Anis Feki; Angela Ford; Victoria Fox; Ana M Fraga; Tzvia Frumkin; Lin Ge; Paul J Gokhale; Tamar Golan-Lev; Hamid Gourabi; Michal Gropp; Guangxiu Lu; Ales Hampl; Katie Harron; Lyn Healy; Wishva Herath; Frida Holm; Outi Hovatta; Johan Hyllner; Maneesha S Inamdar; Astrid Kresentia Irwanto; Tetsuya Ishii; Marisa Jaconi; Ying Jin; Susan Kimber; Sergey Kiselev; Barbara B Knowles; Oded Kopper; Valeri Kukharenko; Anver Kuliev; Maria A Lagarkova; Peter W Laird; Majlinda Lako; Andrew L Laslett; Neta Lavon; Dong Ryul Lee; Jeoung Eun Lee; Chunliang Li; Linda S Lim; Tenneille E Ludwig; Yu Ma; Edna Maltby; Ileana Mateizel; Yoav Mayshar; Maria Mileikovsky; Stephen L Minger; Takamichi Miyazaki; Shin Yong Moon; Harry Moore; Christine Mummery; Andras Nagy; Norio Nakatsuji; Kavita Narwani; Steve K W Oh; Sun Kyung Oh; Cia Olson; Timo Otonkoski; Fei Pan; In-Hyun Park; Steve Pells; Martin F Pera; Lygia V Pereira; Ouyang Qi; Grace Selva Raj; Benjamin Reubinoff; Alan Robins; Paul Robson; Janet Rossant; Ghasem H Salekdeh; Thomas C Schulz; Karen Sermon; Jameelah Sheik Mohamed; Hui Shen; Eric Sherrer; Kuldip Sidhu; Shirani Sivarajah; Heli Skottman; Claudia Spits; Glyn N Stacey; Raimund Strehl; Nick Strelchenko; Hirofumi Suemori; Bowen Sun; Riitta Suuronen; Kazutoshi Takahashi; Timo Tuuri; Parvathy Venu; Yuri Verlinsky; Dorien Ward-van Oostwaard; Daniel J Weisenberger; Yue Wu; Shinya Yamanaka; Lorraine Young; Qi Zhou
Journal:  Nat Biotechnol       Date:  2011-11-27       Impact factor: 54.908

Review 5.  Centromere repositioning in mammals.

Authors:  M Rocchi; N Archidiacono; W Schempp; O Capozzi; R Stanyon
Journal:  Heredity (Edinb)       Date:  2011-11-02       Impact factor: 3.821

Review 6.  Primate chromosome evolution: ancestral karyotypes, marker order and neocentromeres.

Authors:  R Stanyon; M Rocchi; O Capozzi; R Roberto; D Misceo; M Ventura; M F Cardone; F Bigoni; N Archidiacono
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

7.  Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.

Authors:  Mario Ventura; Claudia R Catacchio; Can Alkan; Tomas Marques-Bonet; Saba Sajjadian; Tina A Graves; Fereydoun Hormozdiari; Arcadi Navarro; Maika Malig; Carl Baker; Choli Lee; Emily H Turner; Lin Chen; Jeffrey M Kidd; Nicoletta Archidiacono; Jay Shendure; Richard K Wilson; Evan E Eichler
Journal:  Genome Res       Date:  2011-06-17       Impact factor: 9.043

8.  Uncoupling of satellite DNA and centromeric function in the genus Equus.

Authors:  Francesca M Piras; Solomon G Nergadze; Elisa Magnani; Livia Bertoni; Carmen Attolini; Lela Khoriauli; Elena Raimondi; Elena Giulotto
Journal:  PLoS Genet       Date:  2010-02-12       Impact factor: 5.917

9.  Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication.

Authors:  Maria Francesca Cardone; Zhaoshi Jiang; Pietro D'Addabbo; Nicoletta Archidiacono; Mariano Rocchi; Evan E Eichler; Mario Ventura
Journal:  Genome Biol       Date:  2008-02-07       Impact factor: 13.583

10.  Organization and evolution of Gorilla centromeric DNA from old strategies to new approaches.

Authors:  C R Catacchio; R Ragone; G Chiatante; M Ventura
Journal:  Sci Rep       Date:  2015-09-21       Impact factor: 4.379

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