Literature DB >> 15496071

A set of nonpolar thymidine nucleoside analogues with gradually increasing size.

Tae Woo Kim1, Eric T Kool.   

Abstract

[structure: see text] We describe a series of nonpolar nucleoside analogues having similar shapes and gradually increasing size. The structure of the nucleobase thymine was mimicked with toluene derivatives, replacing O2/O4 with hydrogen, fluorine, chlorine, bromine, and iodine. Glycosidic bonds were formed by reactions of lithiated 2,4-dihalotoluenes with a deoxyribonolactone derivative. Structural analysis by NMR showed similar conformations across the series. The compounds are useful for study of the biological recognition of nucleotides and nucleic acids.

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Year:  2004        PMID: 15496071     DOI: 10.1021/ol048487u

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  10 in total

1.  Importance of steric effects on the efficiency and fidelity of transcription by T7 RNA polymerase.

Authors:  Sébastien Ulrich; Eric T Kool
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

2.  Measurement and theory of hydrogen bonding contribution to isosteric DNA base pairs.

Authors:  Omid Khakshoor; Steven E Wheeler; K N Houk; Eric T Kool
Journal:  J Am Chem Soc       Date:  2012-02-02       Impact factor: 15.419

3.  Probing the active site tightness of DNA polymerase in subangstrom increments.

Authors:  Tae Woo Kim; James C Delaney; John M Essigmann; Eric T Kool
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-25       Impact factor: 11.205

4.  Steric and electrostatic effects in DNA synthesis by the SOS-induced DNA polymerases II and IV of Escherichia coli.

Authors:  Adam P Silverman; Qingfei Jiang; Myron F Goodman; Eric T Kool
Journal:  Biochemistry       Date:  2007-11-08       Impact factor: 3.162

5.  Probing the active site steric flexibility of HIV-1 reverse transcriptase: different constraints for DNA- versus RNA-templated synthesis.

Authors:  Adam P Silverman; Scott J Garforth; Vinayaka R Prasad; Eric T Kool
Journal:  Biochemistry       Date:  2008-03-27       Impact factor: 3.162

6.  Exploring the limits of DNA size: naphtho-homologated DNA bases and pairs.

Authors:  Alex H F Lee; Eric T Kool
Journal:  J Am Chem Soc       Date:  2006-07-19       Impact factor: 15.419

7.  Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity.

Authors:  Matthew W Kellinger; Sébastien Ulrich; Jenny Chong; Eric T Kool; Dong Wang
Journal:  J Am Chem Soc       Date:  2012-05-02       Impact factor: 15.419

8.  DNA interstrand cross-linking upon irradiation of aryl halide C-nucleotides.

Authors:  Dianjie Hou; Marc M Greenberg
Journal:  J Org Chem       Date:  2014-02-24       Impact factor: 4.354

9.  DNA damage and interstrand cross-link formation upon irradiation of aryl iodide C-nucleotide analogues.

Authors:  Hui Ding; Marc M Greenberg
Journal:  J Org Chem       Date:  2010-02-05       Impact factor: 4.354

10.  Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme.

Authors:  Feng Li; Pradeep S Pallan; Martin A Maier; Kallanthottathil G Rajeev; Steven L Mathieu; Christoph Kreutz; Yupeng Fan; Jayodita Sanghvi; Ronald Micura; Eriks Rozners; Muthiah Manoharan; Martin Egli
Journal:  Nucleic Acids Res       Date:  2007-09-18       Impact factor: 16.971

  10 in total

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