Literature DB >> 15493881

Comprehensive analysis of metabolites in Corynebacterium glutamicum by gas chromatography/mass spectrometry.

Sergey Strelkov1, Mirko von Elstermann, Dietmar Schomburg.   

Abstract

An analytical method based on gas chromatography/mass spectrometry was developed for metabolome investigation of Corynebacterium glutamicum. For the first time a fast method for metabolic screening that can be automated is described for this organism. More than 1000 compounds could be detected per experiment, ca. 330 of those showed a peak area significantly above background. Out of these 164 compounds were identified so far, representing derivatives of 121 different metabolites, which were quantified in one sample. In spite of the different chemical nature of metabolites and high matrix content, a measurement reproducibility in the range of 6% error was achieved. The application of this method for the analysis of the adaptation of C. glutamicum to different growth conditions is demonstrated.

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Year:  2004        PMID: 15493881     DOI: 10.1515/BC.2004.111

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  20 in total

Review 1.  Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets.

Authors:  Mariët J van der Werf; Renger H Jellema; Thomas Hankemeier
Journal:  J Ind Microbiol Biotechnol       Date:  2005-05-14       Impact factor: 3.346

2.  Link between phosphate starvation and glycogen metabolism in Corynebacterium glutamicum, revealed by metabolomics.

Authors:  Han Min Woo; Stephan Noack; Gerd M Seibold; Sabine Willbold; Bernhard J Eikmanns; Michael Bott
Journal:  Appl Environ Microbiol       Date:  2010-08-27       Impact factor: 4.792

3.  Identification of a gene encoding a transporter essential for utilization of C4 dicarboxylates in Corynebacterium glutamicum.

Authors:  Haruhiko Teramoto; Tomokazu Shirai; Masayuki Inui; Hideaki Yukawa
Journal:  Appl Environ Microbiol       Date:  2008-06-27       Impact factor: 4.792

4.  Semi-automated non-target processing in GC × GC-MS metabolomics analysis: applicability for biomedical studies.

Authors:  Maud M Koek; Frans M van der Kloet; Robert Kleemann; Teake Kooistra; Elwin R Verheij; Thomas Hankemeier
Journal:  Metabolomics       Date:  2010-07-15       Impact factor: 4.290

5.  Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives.

Authors:  Maud M Koek; Renger H Jellema; Jan van der Greef; Albert C Tas; Thomas Hankemeier
Journal:  Metabolomics       Date:  2010-11-16       Impact factor: 4.290

6.  "Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus.

Authors:  Melanie Zaparty; Dominik Esser; Susanne Gertig; Patrick Haferkamp; Theresa Kouril; Andrea Manica; Trong K Pham; Julia Reimann; Kerstin Schreiber; Pawel Sierocinski; Daniela Teichmann; Marleen van Wolferen; Mathias von Jan; Patricia Wieloch; Sonja V Albers; Arnold J M Driessen; Hans-Peter Klenk; Christa Schleper; Dietmar Schomburg; John van der Oost; Phillip C Wright; Bettina Siebers
Journal:  Extremophiles       Date:  2009-10-04       Impact factor: 2.395

7.  mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics.

Authors:  Bernhard Thielen; Stephanie Heinen; Dietmar Schomburg
Journal:  BMC Bioinformatics       Date:  2009-07-22       Impact factor: 3.169

8.  Metabolic regulation of trisporic acid on Blakeslea trispora revealed by a GC-MS-based metabolomic approach.

Authors:  Jie Sun; Hao Li; Qipeng Yuan
Journal:  PLoS One       Date:  2012-09-25       Impact factor: 3.240

9.  Study on roles of anaplerotic pathways in glutamate overproduction of Corynebacterium glutamicum by metabolic flux analysis.

Authors:  Tomokazu Shirai; Koki Fujimura; Chikara Furusawa; Keisuke Nagahisa; Suteaki Shioya; Hiroshi Shimizu
Journal:  Microb Cell Fact       Date:  2007-06-23       Impact factor: 5.328

10.  Metabolite profiling studies in Saccharomyces cerevisiae: an assisting tool to prioritize host targets for antiviral drug screening.

Authors:  Konstantin Schneider; Jens Olaf Krömer; Christoph Wittmann; Isabel Alves-Rodrigues; Andreas Meyerhans; Juana Diez; Elmar Heinzle
Journal:  Microb Cell Fact       Date:  2009-01-30       Impact factor: 5.328

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