Literature DB >> 15492934

A new set of DNA macrochips for the yeast Saccharomyces cerevisiae: features and uses.

Trinidad M Alberola1, José García-Martínez, Oreto Antúnez, Laia Viladevall, Anna Barceló, Joaquín Ariño, José E Pérez-Ortín.   

Abstract

The yeast Saccharomyces cerevisiae has been widely used for the implementation of DNA chip technologies. For this reason and due to the extensive use of this organism for basic and applied studies, yeast DNA chips are being used by many laboratories for expression or genomic analyses. While membrane arrays (macroarrays) offer several advantages, for many laboratories they are not affordable. Here we report that a cluster of four Spanish molecular-biology yeast laboratories, with relatively small budgets, have developed a complete set of probes for the genome of S. cerevisiae. These have been used to produce a new type of macroarray on a nylon surface. The macroarrays have been evaluated and protocols for their use have been optimized.

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Year:  2004        PMID: 15492934

Source DB:  PubMed          Journal:  Int Microbiol        ISSN: 1139-6709            Impact factor:   2.479


  26 in total

1.  Assessing differential expression measurements by highly parallel pyrosequencing and DNA microarrays: a comparative study.

Authors:  Joaquín Ariño; Antonio Casamayor; Julián Perez Pérez; Laia Pedrola; Miguel Álvarez-Tejado; Martina Marbà; Javier Santoyo; Joaquín Dopazo
Journal:  OMICS       Date:  2011-09-15

2.  Heterologous expression implicates a GATA factor in regulation of nitrogen metabolic genes and ion homeostasis in the halotolerant yeast Debaryomyces hansenii.

Authors:  Raúl García-Salcedo; Antonio Casamayor; Amparo Ruiz; Asier González; Catarina Prista; Maria C Loureiro-Dias; José Ramos; Joaquín Ariño
Journal:  Eukaryot Cell       Date:  2006-08

3.  Biosynthetic and iron metabolism is regulated by thiol proteome changes dependent on glutaredoxin-2 and mitochondrial peroxiredoxin-1 in Saccharomyces cerevisiae.

Authors:  Brian McDonagh; C Alicia Padilla; José Rafael Pedrajas; José Antonio Bárcena
Journal:  J Biol Chem       Date:  2011-03-08       Impact factor: 5.157

4.  The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors.

Authors:  Alfonso Rodríguez-Gil; José García-Martínez; Vicent Pelechano; María de la Cruz Muñoz-Centeno; Vincent Geli; José E Pérez-Ortín; Sebastián Chávez
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

5.  A transcriptomic approach highlights induction of secondary metabolism in citrus fruit in response to Penicillium digitatum infection.

Authors:  Luis González-Candelas; Santiago Alamar; Paloma Sánchez-Torres; Lorenzo Zacarías; Jose F Marcos
Journal:  BMC Plant Biol       Date:  2010-08-31       Impact factor: 4.215

6.  Global expression studies in baker's yeast reveal target genes for the improvement of industrially-relevant traits: the cases of CAF16 and ORC2.

Authors:  Roberto Pérez-Torrado; Joaquín Panadero; María José Hernández-López; José Antonio Prieto; Francisca Randez-Gil
Journal:  Microb Cell Fact       Date:  2010-07-13       Impact factor: 5.328

7.  A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding.

Authors:  Ignacio Bermúdez; José García-Martínez; José E Pérez-Ortín; Joaquim Roca
Journal:  Nucleic Acids Res       Date:  2010-08-04       Impact factor: 16.971

8.  A genomic approach highlights common and diverse effects and determinants of susceptibility on the yeast Saccharomyces cerevisiae exposed to distinct antimicrobial peptides.

Authors:  Belén López-García; Mónica Gandía; Alberto Muñoz; Lourdes Carmona; Jose F Marcos
Journal:  BMC Microbiol       Date:  2010-11-15       Impact factor: 3.605

9.  Normal function of the yeast TOR pathway requires the type 2C protein phosphatase Ptc1.

Authors:  Asier González; Amparo Ruiz; Antonio Casamayor; Joaquín Ariño
Journal:  Mol Cell Biol       Date:  2009-03-09       Impact factor: 4.272

10.  Regulon-specific control of transcription elongation across the yeast genome.

Authors:  Vicent Pelechano; Silvia Jimeno-González; Alfonso Rodríguez-Gil; José García-Martínez; José E Pérez-Ortín; Sebastián Chávez
Journal:  PLoS Genet       Date:  2009-08-21       Impact factor: 5.917

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