Literature DB >> 15491145

Acid-base catalysis in the extradiol catechol dioxygenase reaction mechanism: site-directed mutagenesis of His-115 and His-179 in Escherichia coli 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB).

Sharon Mendel1, Andrew Arndt, Timothy D H Bugg.   

Abstract

The extradiol catechol dioxygenases catalyze the non-heme iron(II)-dependent oxidative cleavage of catechols to 2-hydroxymuconaldehyde products. Previous studies of a biomimetic model reaction for extradiol cleavage have highlighted the importance of acid-base catalysis for this reaction. Two conserved histidine residues were identified in the active site of the class III extradiol dioxygenases, positioned within 4-5 A of the iron(II) cofactor. His-115 and His-179 in Escherichia coli 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) were replaced by glutamine, alanine, and tyrosine. Each mutant enzyme was catalytically inactive for extradiol cleavage, indicating the essential nature of these acid-base residues. Replacement of neighboring residues Asp-114 and Pro-181 gave D114N, P181A, and P181H mutant enzymes with reduced catalytic activity and altered pH/rate profiles, indicating the role of His-179 as a base and His-115 as an acid. Mutant H179Q was catalytically active for the lactone hydrolysis half-reaction, whereas mutant H115Q was inactive, implying a role for His-115 in lactone hydrolysis. A catalytic mechanism involving His-179 and His-115 as acid-base catalytic residues is proposed.

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Year:  2004        PMID: 15491145     DOI: 10.1021/bi048518t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

Review 1.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

2.  Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi.

Authors:  Jia Chen; Wei Li; Mingzhu Wang; Guangyu Zhu; Dongqi Liu; Fei Sun; Ning Hao; Xuemei Li; Zihe Rao; Xuejun C Zhang
Journal:  Protein Sci       Date:  2008-05-27       Impact factor: 6.725

3.  Oxidative opening of the aromatic ring: Tracing the natural history of a large superfamily of dioxygenase domains and their relatives.

Authors:  A Maxwell Burroughs; Margaret E Glasner; Kevin P Barry; Erika A Taylor; L Aravind
Journal:  J Biol Chem       Date:  2019-05-15       Impact factor: 5.157

4.  The alkenyl migration mechanism catalyzed by extradiol dioxygenases: a hybrid DFT study.

Authors:  Tomasz Borowski; Anna Wójcik; Anna Miłaczewska; Valentin Georgiev; Margareta R A Blomberg; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2012-05-24       Impact factor: 3.358

5.  Biochemical and Structural Insights into an Fe(II)/α-Ketoglutarate/O2-Dependent Dioxygenase, Kdo 3-Hydroxylase (KdoO).

Authors:  Sang Hoon Joo; Charles W Pemble; Eun Gyeong Yang; Christian R H Raetz; Hak Suk Chung
Journal:  J Mol Biol       Date:  2018-08-07       Impact factor: 5.469

6.  The role of histidine 200 in MndD, the Mn(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase from Arthrobacter globiformis CM-2, a site-directed mutagenesis study.

Authors:  Joseph P Emerson; Michelle L Wagner; Mark F Reynolds; Lawrence Que; Michael J Sadowsky; Lawrence P Wackett
Journal:  J Biol Inorg Chem       Date:  2005-11-08       Impact factor: 3.358

7.  Kinetic and CD/MCD spectroscopic studies of the atypical, three-His-ligated, non-heme Fe2+ center in diketone dioxygenase: the role of hydrophilic outer shell residues in catalysis.

Authors:  Grit D Straganz; Adrienne R Diebold; Sigrid Egger; Bernd Nidetzky; Edward I Solomon
Journal:  Biochemistry       Date:  2010-02-09       Impact factor: 3.162

8.  Substrate-mediated oxygen activation by homoprotocatechuate 2,3-dioxygenase: intermediates formed by a tyrosine 257 variant.

Authors:  Michael M Mbughuni; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

9.  Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

10.  Crystal structure and functional analysis of the extradiol dioxygenase LapB from a long-chain alkylphenol degradation pathway in Pseudomonas.

Authors:  Jang-Hee Cho; Du-Kyo Jung; Kyoung Lee; Sangkee Rhee
Journal:  J Biol Chem       Date:  2009-10-14       Impact factor: 5.157

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