Literature DB >> 15490464

Analysis and comparison of morphological reconstructions of hippocampal field CA1 pyramidal cells.

José Ambros-Ingerson1, William R Holmes.   

Abstract

Morphological reconstructions have become a routine and valuable tool for neuroscientists. The accuracy of reconstructions is a matter of considerable interest given that they are widely used in computational studies of neural function. Despite their wide usage, comparisons of reconstructions obtained using various methodologies are lacking. We reviewed reconstructions of hippocampal CA1 pyramidal cells from five published studies and found marked differences in some of the most basic measurements. For four of the five studies means of total cell length clustered in the 11,479-13,417-microm range. The remaining study had a significantly larger value for this index at 16,992+/-5,788 microm. Surface area means varied more than 4-fold from 16,074 to 67,102 microm2. Volume means varied more than 8-fold from 3,828 to 30,384 microm3. Simulated passive input resistance means varied from 38.0 to 172.1 MOmega, reflecting the variability in cell dimensions. Estimates of the electrotonic length varied from 1.26 to 1.56. In two reconstructions used in previously published studies, simulated somatic excitatory postsynaptic potentials (EPSPs) varied 2-4-fold in amplitude, time to peak and half-width, for synaptic inputs at similar locations. Substantial jitter on the z-axis was identified as one likely source of the discrepancy in total cell length, while substantial differences in diameter measurements across studies, and sometimes within the same study, accounted for the variability in surface area and volume. While some part of the observed variability is surely due to the diversity of CA1 pyramidal cells, our analysis suggests that a substantial portion stemmed from methodological inconsistencies and from technological limitations. Suggestions are made for improving the quality and usefulness of morphological reconstructions. We conclude that reconstructions across studies have substantial variability in measures that are very relevant to neuronal function. Consequently, modelers are advised to use more than just one reconstructed cell in their simulations of neural function. Copyright (c) 2004 Wiley-Liss, Inc.

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Year:  2005        PMID: 15490464     DOI: 10.1002/hipo.20051

Source DB:  PubMed          Journal:  Hippocampus        ISSN: 1050-9631            Impact factor:   3.899


  15 in total

1.  Signal propagation in oblique dendrites of CA1 pyramidal cells.

Authors:  Michele Migliore; Michele Ferrante; Giorgio A Ascoli
Journal:  J Neurophysiol       Date:  2005-12       Impact factor: 2.714

2.  Fitting experimental data to models that use morphological data from public databases.

Authors:  W R Holmes; J Ambros-Ingerson; L M Grover
Journal:  J Comput Neurosci       Date:  2006-04-22       Impact factor: 1.621

Review 3.  Successes and rewards in sharing digital reconstructions of neuronal morphology.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007

4.  A classification method to distinguish cell-specific responses elicited by current pulses in hippocampal CA1 pyramidal cells.

Authors:  José Ambros-Ingerson; Lawrence M Grover; William R Holmes
Journal:  Neural Comput       Date:  2008-06       Impact factor: 2.026

5.  Non-parametric algorithmic generation of neuronal morphologies.

Authors:  Benjamin Torben-Nielsen; Stijn Vanderlooy; Eric O Postma
Journal:  Neuroinformatics       Date:  2008-09-17

6.  Spine expansion and stabilization associated with long-term potentiation.

Authors:  Yunlei Yang; Xiao-bin Wang; Matthew Frerking; Qiang Zhou
Journal:  J Neurosci       Date:  2008-05-28       Impact factor: 6.167

7.  Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity.

Authors:  Gaddum Duemani Reddy; Keith Kelleher; Rudy Fink; Peter Saggau
Journal:  Nat Neurosci       Date:  2008-04-27       Impact factor: 24.884

8.  Chloride dynamics alter the input-output properties of neurons.

Authors:  Christopher B Currin; Andrew J Trevelyan; Colin J Akerman; Joseph V Raimondo
Journal:  PLoS Comput Biol       Date:  2020-05-26       Impact factor: 4.475

9.  Stimulation-mediated translocation of calmodulin and neurogranin from soma to dendrites of mouse hippocampal CA1 pyramidal neurons.

Authors:  K-P Huang; F L Huang; P K Shetty
Journal:  Neuroscience       Date:  2011-01-20       Impact factor: 3.590

10.  Impaired hippocampal place cell dynamics in a mouse model of the 22q11.2 deletion.

Authors:  Jeffrey D Zaremba; Anastasia Diamantopoulou; Nathan B Danielson; Andres D Grosmark; Patrick W Kaifosh; John C Bowler; Zhenrui Liao; Fraser T Sparks; Joseph A Gogos; Attila Losonczy
Journal:  Nat Neurosci       Date:  2017-09-04       Impact factor: 24.884

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