Literature DB >> 15483389

Quantitative detection of methylated SOCS-1 , a tumor suppressor gene, by a modified protocol of quantitative real time methylation-specific PCR using SYBR green and its use in early gastric cancer detection.

Michael W Y Chan1, Eagle S H Chu, Ka-Fai To, Wai K Leung.   

Abstract

Although methylation-specific PCR (MSP) is a sensitive technique in the detection of DNA hypermethylation, it is not quantitative. Here we described a modified PCR protocol to quantify methylated SOCS-1 gene by real time MSP using SYBR green, which involves an additional PCR step after the 72 degrees C extension step. This modified protocol is also useful in the quantitative detection of methylated SOCS-1 gene in serum samples of gastric cancer patients.

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Year:  2004        PMID: 15483389     DOI: 10.1023/B:BILE.0000044922.43572.2d

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  18 in total

1.  Acid-induced p16 hypermethylation contributes to development of esophageal adenocarcinoma via activation of NADPH oxidase NOX5-S.

Authors:  Jie Hong; Murray Resnick; Jose Behar; Li Juan Wang; Jack Wands; Ronald A DeLellis; Rhonda F Souza; Stuart J Spechler; Weibiao Cao
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2010-06-24       Impact factor: 4.052

2.  MethySYBR, a novel quantitative PCR assay for the dual analysis of DNA methylation and CpG methylation density.

Authors:  Pang-Kuo Lo; Hanano Watanabe; Pi-Chun Cheng; Wei Wen Teo; Xiaohui Liang; Pedram Argani; Ji Shin Lee; Saraswati Sukumar
Journal:  J Mol Diagn       Date:  2009-09       Impact factor: 5.568

3.  Cancer-Associated Fibroblasts in Pancreatic Cancer Are Reprogrammed by Tumor-Induced Alterations in Genomic DNA Methylation.

Authors:  Qian Xiao; Donger Zhou; Agnieszka A Rucki; Jamila Williams; Jiaojiao Zhou; Guanglan Mo; Adrian Murphy; Kenji Fujiwara; Jennifer Kleponis; Bulent Salman; Christopher L Wolfgang; Robert A Anders; Shu Zheng; Elizabeth M Jaffee; Lei Zheng
Journal:  Cancer Res       Date:  2016-08-05       Impact factor: 12.701

Review 4.  Methylation-mediated gene silencing as biomarkers of gastric cancer: a review.

Authors:  Jun Nakamura; Tomokazu Tanaka; Yoshihiko Kitajima; Hirokazu Noshiro; Kohji Miyazaki
Journal:  World J Gastroenterol       Date:  2014-09-14       Impact factor: 5.742

5.  Quantification of regional DNA methylation by liquid chromatography/tandem mass spectrometry.

Authors:  Zhongfa Liu; Jiejun Wu; Zhiliang Xie; Shujun Liu; Patty Fan-Havard; Tim H-M Huang; Christoph Plass; Guido Marcucci; Kenneth K Chan
Journal:  Anal Biochem       Date:  2009-05-12       Impact factor: 3.365

6.  Specificity of methylation assays in cancer research: a guideline for designing primers and probes.

Authors:  Zeinab Barekati; Ramin Radpour; Corina Kohler; Xiao Yan Zhong
Journal:  Obstet Gynecol Int       Date:  2010-07-27

7.  Locked nucleic acids can enhance the analytical performance of quantitative methylation-specific polymerase chain reaction.

Authors:  Karen S Gustafson
Journal:  J Mol Diagn       Date:  2007-12-28       Impact factor: 5.568

8.  SOCS-1 promoter methylation and treatment response in chronic hepatitis C patients receiving pegylated-interferon/ribavirin.

Authors:  Kuo-Chih Tseng; Jian-Liang Chou; Hsien-Bin Huang; Chih-Wei Tseng; Shu-Fen Wu; Michael W Y Chan
Journal:  J Clin Immunol       Date:  2013-05-24       Impact factor: 8.317

9.  Promoter hypermethylation of FBXO32, a novel TGF-beta/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer.

Authors:  Jian-Liang Chou; Her-Young Su; Lin-Yu Chen; Yu-Ping Liao; Corinna Hartman-Frey; Yi-Hui Lai; Hui-Wen Yang; Daniel E Deatherage; Chieh-Ti Kuo; Yi-Wen Huang; Pearlly S Yan; Shu-Huei Hsiao; Chien-Kuo Tai; Huey-Jen L Lin; Ramana V Davuluri; Tai-Kuang Chao; Kenneth P Nephew; Tim H-M Huang; Hung-Cheng Lai; Michael W-Y Chan
Journal:  Lab Invest       Date:  2010-01-11       Impact factor: 5.662

10.  Fibulin 1 is downregulated through promoter hypermethylation in gastric cancer.

Authors:  Y Y Cheng; H Jin; X Liu; J M T Siu; Y P Wong; E K O Ng; J Yu; W-K Leung; J J Y Sung; F K L Chan
Journal:  Br J Cancer       Date:  2008-11-04       Impact factor: 7.640

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