Literature DB >> 15480471

Research applications of the Cambridge Structural Database (CSD).

Frank H Allen1, Robin Taylor.   

Abstract

Crystal structure data are of fundamental importance in a wide spectrum of scientific activities. This tutorial review summarises the principal application areas, so far, for the data from more than 300,000 crystal structures of small organic and metal-organic compounds that are stored in the Cambridge Structural Database (CSD). Direct use of the accumulated data is valuable in establishing standard molecular dimensions, determining conformational preferences and in the study of intermolecular interactions, all of which are crucial in structural chemistry and rational drug design. More recently, information derived from the CSD has been used to construct two dynamic libraries of structural knowledge: Mogul, which stores intramolecular information, and IsoStar, which stores information about intermolecular interactions. These electronic libraries provide information "at the touch of a button". In their turn, the libraries also serve as sources of structural knowledge for applications software that address specific problems in small-molecule and biological chemistry.

Entities:  

Year:  2004        PMID: 15480471     DOI: 10.1039/b309040j

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  8 in total

1.  Intermediates in dioxygen activation by methane monooxygenase: a QM/MM study.

Authors:  David Rinaldo; Dean M Philipp; Stephen J Lippard; Richard A Friesner
Journal:  J Am Chem Soc       Date:  2007-02-28       Impact factor: 15.419

2.  Conformational itinerary of Pseudomonas aeruginosa 1,6-anhydro-N-acetylmuramic acid kinase during its catalytic cycle.

Authors:  John-Paul Bacik; Marjan Tavassoli; Trushar R Patel; Sean A McKenna; David J Vocadlo; Mazdak Khajehpour; Brian L Mark
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

3.  Surface structural-chemical characterization of a single-site d0 heterogeneous arene hydrogenation catalyst having 100% active sites.

Authors:  Linda A Williams; Neng Guo; Alessandro Motta; Massimiliano Delferro; Ignazio L Fragalà; Jeffrey T Miller; Tobin J Marks
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-26       Impact factor: 11.205

Review 4.  Classification of scaffold-hopping approaches.

Authors:  Hongmao Sun; Gregory Tawa; Anders Wallqvist
Journal:  Drug Discov Today       Date:  2011-10-26       Impact factor: 7.851

5.  Using collective knowledge to assign oxidation states of metal cations in metal-organic frameworks.

Authors:  Kevin Maik Jablonka; Daniele Ongari; Seyed Mohamad Moosavi; Berend Smit
Journal:  Nat Chem       Date:  2021-07-05       Impact factor: 24.427

6.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

7.  Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed.

Authors:  Robbie P Joosten; Robert A Nicholls; Jon Agirre
Journal:  Curr Med Chem       Date:  2022       Impact factor: 4.740

8.  Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling.

Authors:  Sunhwan Jo; Hui Sun Lee; Jeffrey Skolnick; Wonpil Im
Journal:  PLoS Comput Biol       Date:  2013-03-14       Impact factor: 4.475

  8 in total

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