Literature DB >> 15479948

An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization.

David Ribet1, Marie Dewannieux, Thierry Heidmann.   

Abstract

The ETn (Early Transposon) elements are among the most active murine mobile sequences, being responsible for a series of mutations by insertion in vivo. Yet they are noncoding, and it had long been suspected that ETn are mobilized in trans by coding-competent elements, most probably from the closely related MusD family of LTR-retrotransposons. A genome-wide in silico search for coding-competent MusD elements identified a total of nine such copies, which we cloned and marked to test their transpositional activity, using an ex vivo assay in heterologous cells. Three copies were found to be autonomous for transposition, with each gag, pro, and pol MusD gene absolutely required for mobility. These active MusD copies specifically trigger retrotransposition of marked ETn elements with high efficiency, by complementation in trans. Characterization of the structures of de novo transposed MusD and ETn marked elements, as well as of their integration sites, disclosed canonical retroviral-like retrotransposition, with 6-bp target site duplications common to both elements. These results highlight the parasitic molecular strategies that are used by the ETn elements for their mobility, and unambiguously identify their "master genes."

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Year:  2004        PMID: 15479948      PMCID: PMC525684          DOI: 10.1101/gr.2924904

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  24 in total

1.  Initial sequencing and comparative analysis of the mouse genome.

Authors:  Robert H Waterston; Kerstin Lindblad-Toh; Ewan Birney; Jane Rogers; Josep F Abril; Pankaj Agarwal; Richa Agarwala; Rachel Ainscough; Marina Alexandersson; Peter An; Stylianos E Antonarakis; John Attwood; Robert Baertsch; Jonathon Bailey; Karen Barlow; Stephan Beck; Eric Berry; Bruce Birren; Toby Bloom; Peer Bork; Marc Botcherby; Nicolas Bray; Michael R Brent; Daniel G Brown; Stephen D Brown; Carol Bult; John Burton; Jonathan Butler; Robert D Campbell; Piero Carninci; Simon Cawley; Francesca Chiaromonte; Asif T Chinwalla; Deanna M Church; Michele Clamp; Christopher Clee; Francis S Collins; Lisa L Cook; Richard R Copley; Alan Coulson; Olivier Couronne; James Cuff; Val Curwen; Tim Cutts; Mark Daly; Robert David; Joy Davies; Kimberly D Delehaunty; Justin Deri; Emmanouil T Dermitzakis; Colin Dewey; Nicholas J Dickens; Mark Diekhans; Sheila Dodge; Inna Dubchak; Diane M Dunn; Sean R Eddy; Laura Elnitski; Richard D Emes; Pallavi Eswara; Eduardo Eyras; Adam Felsenfeld; Ginger A Fewell; Paul Flicek; Karen Foley; Wayne N Frankel; Lucinda A Fulton; Robert S Fulton; Terrence S Furey; Diane Gage; Richard A Gibbs; Gustavo Glusman; Sante Gnerre; Nick Goldman; Leo Goodstadt; Darren Grafham; Tina A Graves; Eric D Green; Simon Gregory; Roderic Guigó; Mark Guyer; Ross C Hardison; David Haussler; Yoshihide Hayashizaki; LaDeana W Hillier; Angela Hinrichs; Wratko Hlavina; Timothy Holzer; Fan Hsu; Axin Hua; Tim Hubbard; Adrienne Hunt; Ian Jackson; David B Jaffe; L Steven Johnson; Matthew Jones; Thomas A Jones; Ann Joy; Michael Kamal; Elinor K Karlsson; Donna Karolchik; Arkadiusz Kasprzyk; Jun Kawai; Evan Keibler; Cristyn Kells; W James Kent; Andrew Kirby; Diana L Kolbe; Ian Korf; Raju S Kucherlapati; Edward J Kulbokas; David Kulp; Tom Landers; J P Leger; Steven Leonard; Ivica Letunic; Rosie Levine; Jia Li; Ming Li; Christine Lloyd; Susan Lucas; Bin Ma; Donna R Maglott; Elaine R Mardis; Lucy Matthews; Evan Mauceli; John H Mayer; Megan McCarthy; W Richard McCombie; Stuart McLaren; Kirsten McLay; John D McPherson; Jim Meldrim; Beverley Meredith; Jill P Mesirov; Webb Miller; Tracie L Miner; Emmanuel Mongin; Kate T Montgomery; Michael Morgan; Richard Mott; James C Mullikin; Donna M Muzny; William E Nash; Joanne O Nelson; Michael N Nhan; Robert Nicol; Zemin Ning; Chad Nusbaum; Michael J O'Connor; Yasushi Okazaki; Karen Oliver; Emma Overton-Larty; Lior Pachter; Genís Parra; Kymberlie H Pepin; Jane Peterson; Pavel Pevzner; Robert Plumb; Craig S Pohl; Alex Poliakov; Tracy C Ponce; Chris P Ponting; Simon Potter; Michael Quail; Alexandre Reymond; Bruce A Roe; Krishna M Roskin; Edward M Rubin; Alistair G Rust; Ralph Santos; Victor Sapojnikov; Brian Schultz; Jörg Schultz; Matthias S Schwartz; Scott Schwartz; Carol Scott; Steven Seaman; Steve Searle; Ted Sharpe; Andrew Sheridan; Ratna Shownkeen; Sarah Sims; Jonathan B Singer; Guy Slater; Arian Smit; Douglas R Smith; Brian Spencer; Arne Stabenau; Nicole Stange-Thomann; Charles Sugnet; Mikita Suyama; Glenn Tesler; Johanna Thompson; David Torrents; Evanne Trevaskis; John Tromp; Catherine Ucla; Abel Ureta-Vidal; Jade P Vinson; Andrew C Von Niederhausern; Claire M Wade; Melanie Wall; Ryan J Weber; Robert B Weiss; Michael C Wendl; Anthony P West; Kris Wetterstrand; Raymond Wheeler; Simon Whelan; Jamey Wierzbowski; David Willey; Sophie Williams; Richard K Wilson; Eitan Winter; Kim C Worley; Dudley Wyman; Shan Yang; Shiaw-Pyng Yang; Evgeny M Zdobnov; Michael C Zody; Eric S Lander
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

Review 2.  Targeting survival: integration site selection by retroviruses and LTR-retrotransposons.

Authors:  Frederic D Bushman
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

3.  Alu: a parasite's parasite?

Authors:  Carl W Schmid
Journal:  Nat Genet       Date:  2003-09       Impact factor: 38.330

4.  Insertional polymorphisms of full-length endogenous retroviruses in humans.

Authors:  G Turner; M Barbulescu; M Su; M I Jensen-Seaman; K K Kidd; J Lenz
Journal:  Curr Biol       Date:  2001-10-02       Impact factor: 10.834

5.  Early differential tissue expression of transposon-like repetitive DNA sequences of the mouse.

Authors:  P Brûlet; M Kaghad; Y S Xu; O Croissant; F Jacob
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

Review 6.  Biology of mammalian L1 retrotransposons.

Authors:  E M Ostertag; H H Kazazian
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

7.  Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse.

Authors:  Corinna Baust; Liane Gagnier; Greg J Baillie; Muriel J Harris; Diana M Juriloff; Dixie L Mager
Journal:  J Virol       Date:  2003-11       Impact factor: 5.103

8.  Insertional polymorphisms of ETn retrotransposons include a disruption of the wiz gene in C57BL/6 mice.

Authors:  Corinna Baust; Greg J Baillie; Dixie L Mager
Journal:  Mamm Genome       Date:  2002-08       Impact factor: 2.957

9.  Identification of autonomous IAP LTR retrotransposons mobile in mammalian cells.

Authors:  Marie Dewannieux; Anne Dupressoir; Francis Harper; Gérard Pierron; Thierry Heidmann
Journal:  Nat Genet       Date:  2004-04-25       Impact factor: 38.330

10.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

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  49 in total

1.  The RNA transport element of the murine musD retrotransposon requires long-range intramolecular interactions for function.

Authors:  Michal Legiewicz; Andrei S Zolotukhin; Guy R Pilkington; Katarzyna J Purzycka; Michelle Mitchell; Hiroaki Uranishi; Jenifer Bear; George N Pavlakis; Stuart F J Le Grice; Barbara K Felber
Journal:  J Biol Chem       Date:  2010-10-26       Impact factor: 5.157

2.  Transcriptional regulation of early transposon elements, an active family of mouse long terminal repeat retrotransposons.

Authors:  Irina A Maksakova; Dixie L Mager
Journal:  J Virol       Date:  2005-11       Impact factor: 5.103

Review 3.  Transposable elements as drivers of genomic and biological diversity in vertebrates.

Authors:  Astrid Böhne; Frédéric Brunet; Delphine Galiana-Arnoux; Christina Schultheis; Jean-Nicolas Volff
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

4.  Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons.

Authors:  Irina A Maksakova; Ying Zhang; Dixie L Mager
Journal:  Mol Cell Biol       Date:  2009-03-09       Impact factor: 4.272

5.  Translation from nonautonomous type IAP retrotransposon is a critical determinant of transposition activity: implication for retrotransposon-mediated genome evolution.

Authors:  Ei-Suke Saito; Vincent W Keng; Junji Takeda; Kyoji Horie
Journal:  Genome Res       Date:  2008-05-02       Impact factor: 9.043

6.  Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus.

Authors:  Eigo Fukai; Alicja Dorota Dobrowolska; Lene Heegaard Madsen; Esben Bjørn Madsen; Yosuke Umehara; Hiroshi Kouchi; Hirohiko Hirochika; Jens Stougaard
Journal:  Plant Mol Biol       Date:  2008-09-19       Impact factor: 4.076

7.  A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains.

Authors:  Yongming Wang; Frantisek Liska; Claudia Gosele; Lucie Sedová; Vladimír Kren; Drahomíra Krenová; Zoltán Ivics; Norbert Hubner; Zsuzsanna Izsvák
Journal:  Genome Res       Date:  2009-11-03       Impact factor: 9.043

8.  Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences.

Authors:  Rafael Contreras-Galindo; Mark H Kaplan; Derek Dube; Marta J Gonzalez-Hernandez; Susana Chan; Fan Meng; Manhong Dai; Gilbert S Omenn; Scott D Gitlin; David M Markovitz
Journal:  J Virol       Date:  2015-04-29       Impact factor: 5.103

9.  Genetically regulated epigenetic transcriptional activation of retrotransposon insertion confers mouse dactylaplasia phenotype.

Authors:  Hiroki Kano; Hiroki Kurahashi; Tatsushi Toda
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-05       Impact factor: 11.205

10.  Characterization of the ETnII-alpha endogenous retroviral element in the BALB/cJ Zhx2 ( Afr1 ) allele.

Authors:  Sudhir Perincheri; David K Peyton; Michelle Glenn; Martha L Peterson; Brett T Spear
Journal:  Mamm Genome       Date:  2007-12-08       Impact factor: 2.957

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