Literature DB >> 15473724

Analysis of cooperativity and localization for atomic rearrangements.

Semen A Trygubenko1, David J Wales.   

Abstract

We propose measures of localization and cooperativity for the analysis of atomic rearrangements. We show that for both clusters and bulk material cooperative rearrangements usually have significantly lower barriers than uncooperative ones, irrespective of the degree of localization. We also find that previous methods used to sample stationary points are biased towards rearrangements of particular types. Linear interpolation between local minima in double-ended transition state searches tends to produce cooperative rearrangements, while random perturbations of all the coordinates, as sometimes used in single-ended searches, have the opposite effect.

Year:  2004        PMID: 15473724     DOI: 10.1063/1.1794653

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Archetypal landscapes for deep neural networks.

Authors:  Philipp C Verpoort; Alpha A Lee; David J Wales
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-25       Impact factor: 11.205

2.  Machine learning landscapes and predictions for patient outcomes.

Authors:  Ritankar Das; David J Wales
Journal:  R Soc Open Sci       Date:  2017-07-26       Impact factor: 2.963

3.  Origin and nature of spontaneous shape fluctuations in "small" nanoparticles.

Authors:  Ying Yang; Hao Zhang; Jack F Douglas
Journal:  ACS Nano       Date:  2014-07-11       Impact factor: 15.881

  3 in total

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