Literature DB >> 15472357

Sequence-based typing of flaB is a more stable screening tool than typing of flaA for monitoring of Campylobacter populations.

Alexander Mellmann1, Jan Mosters, Edda Bartelt, Peter Roggentin, Andrea Ammon, Alexander W Friedrich, Helge Karch, Dag Harmsen.   

Abstract

Different typing schemes for Campylobacter spp. were evaluated with 70 outbreak and sporadic isolates. The discriminatory indexes were 0.944 (by pulsed-field gel electrophoresis), 0.920 (by genotyping of the flagellin A gene), 0.902 (by genotyping of flaB), and 0.886 (by multilocus sequence typing). Cross-classification gave 94.77 or 95.82% (PFGE-flaA or PFGE-flaB) concordance. flaA was overdiscriminatory in three cases, most probably due to intragenomic recombination.

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Year:  2004        PMID： 15472357      PMCID： PMC522316          DOI： 10.1128/JCM.42.10.4840-4842.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  15 in total

1.  Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms.

Authors:  H Grundmann; S Hori; G Tanner
Journal:  J Clin Microbiol       Date:  2001-11       Impact factor: 5.948

2.  Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems.

Authors:  M. J. Struelens
Journal:  Clin Microbiol Infect       Date:  1996-08       Impact factor: 8.067

3.  Evidence for recombination in the flagellin locus of Campylobacter jejuni: implications for the flagellin gene typing scheme.

Authors:  C S Harrington; F M Thomson-Carter; P E Carter
Journal:  J Clin Microbiol       Date:  1997-09       Impact factor: 5.948

4.  Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management.

Authors:  Dag Harmsen; Heike Claus; Wolfgang Witte; Jörg Rothgänger; Hermann Claus; Doris Turnwald; Ulrich Vogel
Journal:  J Clin Microbiol       Date:  2003-12       Impact factor: 5.948

5.  The IS1167 insertion sequence is a phylogenetically informative marker among isolates of serotype 6B Streptococcus pneumoniae.

Authors:  D A Robinson; S K Hollingshead; J M Musser; A J Parkinson; D E Briles; M J Crain
Journal:  J Mol Evol       Date:  1998-08       Impact factor: 2.395

6.  The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.

Authors:  J Parkhill; B W Wren; K Mungall; J M Ketley; C Churcher; D Basham; T Chillingworth; R M Davies; T Feltwell; S Holroyd; K Jagels; A V Karlyshev; S Moule; M J Pallen; C W Penn; M A Quail; M A Rajandream; K M Rutherford; A H van Vliet; S Whitehead; B G Barrell
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

7.  Discrimination of Campylobacter jejuni isolates by fla gene sequencing.

Authors:  R J Meinersmann; L O Helsel; P I Fields; K L Hiett
Journal:  J Clin Microbiol       Date:  1997-11       Impact factor: 5.948

8.  Family clusters of campylobacter infection.

Authors:  C D Ribeiro; J A Frost
Journal:  Commun Dis Public Health       Date:  2000-12

9.  Variation of the flagellin gene locus of Campylobacter jejuni by recombination and horizontal gene transfer.

Authors:  T M Wassenaar; B N Fry; B A van der Zeijst
Journal:  Microbiology       Date:  1995-01       Impact factor: 2.777

10.  Utility of multilocus sequence typing as an epidemiological tool for investigation of outbreaks of gastroenteritis caused by Campylobacter jejuni.

Authors:  Andrew D Sails; Bala Swaminathan; Patricia I Fields
Journal:  J Clin Microbiol       Date:  2003-10       Impact factor: 5.948
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  11 in total

1.  Comprehensive detection and discrimination of Campylobacter species by use of confocal micro-Raman spectroscopy and multilocus sequence typing.

Authors:  Xiaonan Lu; Qian Huang; William G Miller; D Eric Aston; Jie Xu; Feng Xue; Hongwei Zhang; Barbara A Rasco; Shuo Wang; Michael E Konkel
Journal:  J Clin Microbiol       Date:  2012-06-27       Impact factor: 5.948

2.  Fingerprinting of Campylobacter jejuni by using resolution-optimized binary gene targets derived from comparative genome hybridization studies.

Authors:  Erin P Price; Flavia Huygens; Philip M Giffard
Journal:  Appl Environ Microbiol       Date:  2006-09-22       Impact factor: 4.792

3.  Genotype and antibiotic resistance analyses of Campylobacter isolates from ceca and carcasses of slaughtered broiler flocks.

Authors:  Simone E Wirz; Gudrun Overesch; Peter Kuhnert; Bozena M Korczak
Journal:  Appl Environ Microbiol       Date:  2010-08-13       Impact factor: 4.792

4.  Genotypes and antibiotic resistances of Campylobacter jejuni and Campylobacter coli isolates from domestic and travel-associated human cases.

Authors:  Lilian Niederer; Peter Kuhnert; Ralph Egger; Sabina Büttner; Herbert Hächler; Bozena M Korczak
Journal:  Appl Environ Microbiol       Date:  2011-10-21       Impact factor: 4.792

5.  Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Authors:  Songzhe Fu; Sophie Octavia; Mark M Tanaka; Vitali Sintchenko; Ruiting Lan
Journal:  J Clin Microbiol       Date:  2015-05-27       Impact factor: 5.948

6.  Multilocus sequence typing, pulsed-field gel electrophoresis, and fla short variable region typing of clonal complexes of Campylobacter jejuni strains of human, bovine, and poultry origins in Luxembourg.

Authors:  Catherine Ragimbeau; François Schneider; Serge Losch; Jos Even; Joël Mossong
Journal:  Appl Environ Microbiol       Date:  2008-10-17       Impact factor: 4.792

7.  Multiplex strategy for multilocus sequence typing, fla typing, and genetic determination of antimicrobial resistance of Campylobacter jejuni and Campylobacter coli isolates collected in Switzerland.

Authors:  Bozena M Korczak; Monika Zurfluh; Stefan Emler; Jacqueline Kuhn-Oertli; Peter Kuhnert
Journal:  J Clin Microbiol       Date:  2009-05-13       Impact factor: 5.948

Review 8.  Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.

Authors:  Eduardo N Taboada; Morag R Graham; João A Carriço; Gary Van Domselaar
Journal:  Front Microbiol       Date:  2017-05-23       Impact factor: 5.640

9.  Genomic analysis of Campylobacter fetus subspecies: identification of candidate virulence determinants and diagnostic assay targets.

Authors:  Paula M Moolhuijzen; Ala E Lew-Tabor; Bartosz M Wlodek; Fernán G Agüero; Diego J Comerci; Rodolfo A Ugalde; Daniel O Sanchez; Rudi Appels; Matthew Bellgard
Journal:  BMC Microbiol       Date:  2009-05-08       Impact factor: 3.605

10.  Extended sequence typing of Campylobacter spp., United Kingdom.

Authors:  Kate E Dingle; Noel D McCarthy; Alison J Cody; Tim E A Peto; Martin C J Maiden
Journal:  Emerg Infect Dis       Date:  2008-10       Impact factor: 6.883
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