Literature DB >> 15470754

Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensis.

Cooduvalli Shashikant1, Stacey A Bolanowski, Joshua Danke, Chris T Amemiya.   

Abstract

Hoxc8 early enhancer controls the initiation and establishment phase of Hoxc8 expression in the mouse. Comparative studies indicate the presence of Hoxc8 early enhancer sequences in different vertebrate clades including mammals, birds and fish. Previous studies have shown differences between teleost and mammalian Hoxc8 early enhancers with respect to sequence and organization of protein binding elements. This raises the question of when the Hoxc8 early enhancer arose and how it has become modified in different vertebrate lineages. Here, we describe Hoxc8 early enhancer from the Indonesian coelacanth, Latimeria menadoensis. Coelacanths are the only extant lobefinned fish whose genome is tractable to genome analysis. The Latimeria Hoxc8 early enhancer sequence more closely resembles that of the mouse than that of Fugu or zebrafish. When assayed for enhancer activity by reporter gene analysis in transgenic mouse embryos, Latimeria Hoxc8 early enhancer directs expression to the posterior neural tube and mesoderm similar to that of the mouse enhancer. These observations support a close relationship between coelacanths and tetrapods and place the origin of a common Hoxc8 early enhancer sequence within the sarcopterygian lineage. The divergence of teleost (actinopterygii) Hoxc8 early enhancer may reflect a case of relaxed selection or other forms of instability induced by genome duplication events. Copyright 2004 Wiley-Liss, Inc.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15470754     DOI: 10.1002/jez.b.21018

Source DB:  PubMed          Journal:  J Exp Zool B Mol Dev Evol        ISSN: 1552-5007            Impact factor:   2.656


  4 in total

1.  A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.

Authors:  Jeramiah J Smith; Kenta Sumiyama; Chris T Amemiya
Journal:  Mol Biol Evol       Date:  2011-10-31       Impact factor: 16.240

2.  Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis.

Authors:  Alberto Pallavicini; Adriana Canapa; Marco Barucca; Jessica Alfőldi; Maria Assunta Biscotti; Francesco Buonocore; Gianluca De Moro; Federica Di Palma; Anna Maria Fausto; Mariko Forconi; Marco Gerdol; Daisy Monica Makapedua; Jason Turner-Meier; Ettore Olmo; Giuseppe Scapigliati
Journal:  BMC Genomics       Date:  2013-08-08       Impact factor: 3.969

3.  Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.

Authors:  Chris T Amemiya; Thomas P Powers; Sonja J Prohaska; Jane Grimwood; Jeremy Schmutz; Mark Dickson; Tsutomu Miyake; Michael A Schoenborn; Richard M Myers; Francis H Ruddle; Peter F Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

4.  Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position.

Authors:  Michael Lang; Yavor Hadzhiev; Nicol Siegel; Chris T Amemiya; Carolina Parada; Uwe Strähle; May-Britt Becker; Ferenc Müller; Axel Meyer
Journal:  Evodevo       Date:  2010-11-03       Impact factor: 2.250

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.