Literature DB >> 15470466

Exploiting biological complexity for strain improvement through systems biology.

Gregory Stephanopoulos1, Hal Alper, Joel Moxley.   

Abstract

Cellular complexity makes it difficult to build a complete understanding of cellular function but also offers innumerable possibilities for modifying the cellular machinery to achieve a specific purpose. The exploitation of cellular complexity for strain improvement has been a challenging goal for applied biological research because it requires the coordinated understanding of multiple cellular processes. It is therefore pursued most efficiently in the framework of systems biology. Progress in strain improvement will depend not only on advances in technologies for high-throughput measurements but, more importantly, on the development of theoretical methods that increase the information content of these measurements and, as such, facilitate the elucidation of mechanisms and the identification of genetic targets for modification.

Mesh:

Year:  2004        PMID: 15470466     DOI: 10.1038/nbt1016

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  29 in total

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Authors:  Marco Avila-Elchiver; Deepak Nagrath; Martin L Yarmush
Journal:  Mol Biosyst       Date:  2011-11-10

2.  Structural kinetic modeling of metabolic networks.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-31       Impact factor: 11.205

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Authors:  Xiang-Yang Lou; Guo-Bo Chen; Lei Yan; Jennie Z Ma; Jun Zhu; Robert C Elston; Ming D Li
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4.  Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: a systems biological analysis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-07       Impact factor: 11.205

5.  Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

Review 6.  The future of metabolic engineering and synthetic biology: towards a systematic practice.

Authors:  Vikramaditya G Yadav; Marjan De Mey; Chin Giaw Lim; Parayil Kumaran Ajikumar; Gregory Stephanopoulos
Journal:  Metab Eng       Date:  2012-05       Impact factor: 9.783

Review 7.  Engineering synergy in biotechnology.

Authors:  Jens Nielsen; Martin Fussenegger; Jay Keasling; Sang Yup Lee; James C Liao; Kristala Prather; Bernhard Palsson
Journal:  Nat Chem Biol       Date:  2014-05       Impact factor: 15.040

8.  Metabolic flexibility of D-ribose producer strain of Bacillus pumilus under environmental perturbations.

Authors:  Rajesh K Srivastava; Soumen K Maiti; Debasish Das; Prashant M Bapat; Kritika Batta; Mani Bhushan; Pramod P Wangikar
Journal:  J Ind Microbiol Biotechnol       Date:  2012-03-22       Impact factor: 3.346

9.  Microbial production strategies and applications of lycopene and other terpenoids.

Authors:  Tian Ma; Zixin Deng; Tiangang Liu
Journal:  World J Microbiol Biotechnol       Date:  2015-12-29       Impact factor: 3.312

10.  A multi-layer inference approach to reconstruct condition-specific genes and their regulation.

Authors:  Ming Wu; Li Liu; Hussein Hijazi; Christina Chan
Journal:  Bioinformatics       Date:  2013-04-22       Impact factor: 6.937

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