Literature DB >> 15468360

Analysis of CARD15 polymorphisms in Korean patients with ankylosing spondylitis reveals absence of common variants seen in western populations.

Tae-Hwan Kim1, Proton Rahman, Jae-Bum Jun, Hye-Soon Lee, Yong-Wook Park, Ho Joon Im, Tara Snelgrove, Lynette Peddle, David Hallett, Robert D Inman.   

Abstract

OBJECTIVE: Substantial epidemiological and genetic evidence suggests that ankylosing spondylitis (AS) is likely due to an interplay of genetic and environmental factors. Recently, CARD15, located in chromosome 16q12, has been established as a disease susceptibility gene for Crohn's disease, Blau syndrome, and possibly psoriatic arthritis. Association studies in admixed populations from Northern European ancestry noted no such association between CARD15 mutations and AS. However, a homogenous population has yet to be studied. We investigated the prevalence of the 3 common CARD15 variants in a homogenous Korean population with AS.
METHODS: All subjects were native Koreans with AS satisfying the modified New York criteria. Korean controls were examined and confirmed to be unaffected by AS. Subjects with AS were genotyped for the R702W, G908R, and Leu1007fsinsC variants of CARD15 using mass array MALDI-TOF mass spectrometry.
RESULTS: A total of 205 AS subjects and 200 controls were genotyped. No subject with AS had any variants at the 702 and 1007 sites of CARD15. Only one subject was heterozygous for the 908 variant. The overall genotype frequency in AS for any CARD15 variant was 0.5%. No control had any of the 3 CARD15 variants.
CONCLUSION: Our findings indicate that the CARD15 gene is not a major contributor to AS susceptibility in the Korean population.

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Year:  2004        PMID: 15468360

Source DB:  PubMed          Journal:  J Rheumatol        ISSN: 0315-162X            Impact factor:   4.666


  5 in total

1.  Large-scale characterization of public database SNPs causing non-synonymous changes in three ethnic groups.

Authors:  James Ireland; Victoria E H Carlton; Matthew Falkowski; Martin Moorhead; Karen Tran; Francisco Useche; Paul Hardenbol; Ayca Erbilgin; Ron Fitzgerald; Thomas D Willis; Malek Faham
Journal:  Hum Genet       Date:  2005-12-14       Impact factor: 4.132

2.  NOD2/CARD15 gene mutations in patients with gouty arthritis.

Authors:  Ahmet Karaarslan; Senol Kobak; Afig Berdeli
Journal:  Bosn J Basic Med Sci       Date:  2016-11-10       Impact factor: 3.363

Review 3.  Functional single nucleotide polymorphism-based association studies.

Authors:  Victoria E H Carlton; James S Ireland; Francisco Useche; Malek Faham
Journal:  Hum Genomics       Date:  2006-06       Impact factor: 4.639

4.  Analysis of single nucleotide polymorphisms in Toll-like receptor 4 shows no association with ankylosing spondylitis in a Korean population.

Authors:  Kyoung-Sun Na; Tae-Hwan Kim; Proton Rahman; Lynette Peddle; Chan-Bum Choi; Robert D Inman
Journal:  Rheumatol Int       Date:  2007-11-22       Impact factor: 2.631

5.  Clinical and Genetic Features of Korean Patients with Recurrent Fever and Multi-System Inflammation without Infectious or Autoimmune Evidence.

Authors:  Ji Ae Yang; Ji Yong Choi; Eun Ha Kang; You-Jung Ha; Yun Jong Lee; Yeong Wook Song
Journal:  J Korean Med Sci       Date:  2016-01-26       Impact factor: 2.153

  5 in total

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