Literature DB >> 15465317

Combining prediction, computation and experiment for the characterization of protein disorder.

Clay Bracken1, Lilia M Iakoucheva, Pedro R Romero, A Keith Dunker.   

Abstract

Several computational and experimental methods exist for identifying disordered residues within proteins. Computational algorithms can now identify these disordered sequences and predict their occurrence within genomes with relatively high accuracy. Recent advances in NMR and mass spectroscopy permit faster and more detailed studies of disordered states at atomic resolutions. Combining prediction, computation and experimentation is proposed to accelerate and enhance the characterization of intrinsically disordered protein. Copyright 2004 Elsevier Ltd.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15465317     DOI: 10.1016/j.sbi.2004.08.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  38 in total

1.  Electrostatically accelerated coupled binding and folding of intrinsically disordered proteins.

Authors:  Debabani Ganguly; Steve Otieno; Brett Waddell; Luigi Iconaru; Richard W Kriwacki; Jianhan Chen
Journal:  J Mol Biol       Date:  2012-06-19       Impact factor: 5.469

Review 2.  Modeling loop entropy.

Authors:  Gregory S Chirikjian
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

3.  Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

Authors:  Jessica Walton Chen; Pedro Romero; Vladimir N Uversky; A Keith Dunker
Journal:  J Proteome Res       Date:  2006-04       Impact factor: 4.466

4.  Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.

Authors:  Jessica Walton Chen; Pedro Romero; Vladimir N Uversky; A Keith Dunker
Journal:  J Proteome Res       Date:  2006-04       Impact factor: 4.466

5.  Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations.

Authors:  Kei-ichi Okazaki; Nobuyasu Koga; Shoji Takada; Jose N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-28       Impact factor: 11.205

6.  Molecular basis for specificity in the druggable kinome: sequence-based analysis.

Authors:  Jianping Chen; Xi Zhang; Ariel Fernández
Journal:  Bioinformatics       Date:  2007-01-25       Impact factor: 6.937

7.  Protein grabs a ligand by extending anchor residues: molecular simulation for Ca2+ binding to calmodulin loop.

Authors:  Chigusa Kobayashi; Shoji Takada
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

8.  Identification of transient hub proteins and the possible structural basis for their multiple interactions.

Authors:  Miho Higurashi; Takashi Ishida; Kengo Kinoshita
Journal:  Protein Sci       Date:  2008-01       Impact factor: 6.725

Review 9.  Amyloidogenesis of natively unfolded proteins.

Authors:  Vladimir N Uversky
Journal:  Curr Alzheimer Res       Date:  2008-06       Impact factor: 3.498

10.  Structural reorganization of alpha-synuclein at low pH observed by NMR and REMD simulations.

Authors:  Kuen-Phon Wu; Daniel S Weinstock; Chitra Narayanan; Ronald M Levy; Jean Baum
Journal:  J Mol Biol       Date:  2009-07-01       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.