Literature DB >> 15465316

The extended interface: measuring non-local effects in biomolecular interactions.

John E Ladbury1, Mark A Williams.   

Abstract

Improvements in the sensitivity and availability of biophysical techniques for the detection of the formation of complexes in solution are revealing that the effects of binding are not restricted to the direct contacts between the biomolecules or even to a localised site. Rather, information about the binding event is transmitted throughout the biomolecules and the surrounding solution through changes in the hydrogen bonding, hydration and electrostatic field as the complex is formed. Calorimetric, volumetric and NMR methods are beginning to provide a quantitative view of the nature and thermodynamic consequences of this extended interface, and the resulting data pose a major challenge for computational models of binding. Copyright 2004 Elsevier Ltd.

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Year:  2004        PMID: 15465316     DOI: 10.1016/j.sbi.2004.08.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  Hydration changes in the association of Hoechst 33258 with DNA.

Authors:  John R Kiser; Richard W Monk; Rondey L Smalls; Jeffrey T Petty
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

2.  Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: application to adaptor protein complexes in cell signaling.

Authors:  Jon C D Houtman; Patrick H Brown; Brent Bowden; Hiroshi Yamaguchi; Ettore Appella; Lawrence E Samelson; Peter Schuck
Journal:  Protein Sci       Date:  2007-01       Impact factor: 6.725

3.  Configurational entropy change of netropsin and distamycin upon DNA minor-groove binding.

Authors:  Jozica Dolenc; Riccardo Baron; Chris Oostenbrink; Joze Koller; Wilfred F van Gunsteren
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

4.  H-NS is a part of a thermally controlled mechanism for bacterial gene regulation.

Authors:  Shusuke Ono; Martin D Goldberg; Tjelvar Olsson; Diego Esposito; Jay C D Hinton; John E Ladbury
Journal:  Biochem J       Date:  2005-10-15       Impact factor: 3.857

5.  Conformational sampling of peptides in cellular environments.

Authors:  Seiichiro Tanizaki; Jacob Clifford; Brian D Connelly; Michael Feig
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

6.  Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Hisashi Yagi; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

7.  Conformational sampling of peptides in the presence of protein crowders from AA/CG-multiscale simulations.

Authors:  Alexander V Predeus; Seref Gul; Srinivasa M Gopal; Michael Feig
Journal:  J Phys Chem B       Date:  2012-04-05       Impact factor: 2.991

8.  Folding and homodimerization of wheat germ agglutinin.

Authors:  María Del Carmen Portillo-Téllez; Martiniano Bello; Guillermo Salcedo; Gabriel Gutiérrez; Virginia Gómez-Vidales; Enrique García-Hernández
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

9.  Biophysical studies of a ruthenium(II) polypyridyl complex binding to DNA and RNA prove that nucleic acid structure has significant effects on binding behaviors.

Authors:  Hong Xu; Yi Liang; Peng Zhang; Fen Du; Bing-Rui Zhou; Jun Wu; Jian-Hong Liu; Zhi-Gang Liu; Liang-Nian Ji
Journal:  J Biol Inorg Chem       Date:  2005-09-23       Impact factor: 3.358

Review 10.  Analysis of cooperativity by isothermal titration calorimetry.

Authors:  Alan Brown
Journal:  Int J Mol Sci       Date:  2009-08-04       Impact factor: 5.923

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