Literature DB >> 15461453

Role of arginine-82 in fast proton release during the bacteriorhodopsin photocycle: a time-resolved FT-IR study of purple membranes containing 15N-labeled arginine.

Yaowu Xiao1, M Shane Hutson, Marina Belenky, Judith Herzfeld, Mark S Braiman.   

Abstract

Arginine-82 has long been recognized as an important residue in bacteriorhodopsin (bR), because its mutation usually results in loss of fast H(+) release, an important step in the normal light-induced H(+) transport mechanism. To help to clarify the structural changes in Arg-82 associated with the H(+)-release step, we have measured time-resolved FT-IR difference spectra of wild-type bR containing either natural-abundance isotopes ((14)N-Arg-bR) or all seven arginines selectively and uniformly labeled with (15)N at the two eta-nitrogens ((15)N-Arg-bR). Comparison of the spectra from the two isotopic variants shows that a 1556 cm(-1) vibrational difference band due to the M photocycle intermediate of (14)N-Arg-bR loses substantial intensity in (15)N-Arg-bR. However, this isotope-sensitive arginine vibrational difference band is only observed at pH 7 and not at pH 4 where fast H(+) release is blocked. These observations support the earlier conclusion, based on site-directed mutagenesis and chemical labeling, that a strong C-N stretch vibration of Arg-82 can be assigned to a highly perturbed frequency near 1555 cm(-1) in the M state of wild-type bR [Hutson et al. (2000) Biochemistry 39, 13189-13200]. Furthermore, alkylguanidine model compound spectra indicate that the unusually low arginine C-N stretch frequency in the M state is consistent with a nearly stoichiometric light-induced deprotonation of an arginine side chain within bR, presumably arginine-82.

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Year:  2004        PMID: 15461453     DOI: 10.1021/bi049238g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  17 in total

1.  Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.

Authors:  Rahul Singh; Jason C Grigg; Zachary Armstrong; Michael E P Murphy; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2012-02-03       Impact factor: 5.157

2.  Proton binding within a membrane protein by a protonated water cluster.

Authors:  Florian Garczarek; Leonid S Brown; Janos K Lanyi; Klaus Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

3.  Structure changes upon deprotonation of the proton release group in the bacteriorhodopsin photocycle.

Authors:  Joel E Morgan; Ahmet S Vakkasoglu; Janos K Lanyi; Johan Lugtenburg; Robert B Gennis; Akio Maeda
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

4.  Conformational changes in the archaerhodopsin-3 proton pump: detection of conserved strongly hydrogen bonded water networks.

Authors:  Erica C Saint Clair; John I Ogren; Sergey Mamaev; Joel M Kralj; Kenneth J Rothschild
Journal:  J Biol Phys       Date:  2011-12-10       Impact factor: 1.365

Review 5.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

6.  Infrared and visible absolute and difference spectra of bacteriorhodopsin photocycle intermediates.

Authors:  Richard W Hendler; Curtis W Meuse; Mark S Braiman; Paul D Smith; John W Kakareka
Journal:  Appl Spectrosc       Date:  2011-09       Impact factor: 2.388

7.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

8.  Coordinating the structural rearrangements associated with unidirectional proton transfer in the bacteriorhodopsin photocycle induced by deprotonation of the proton-release group: a time-resolved difference FTIR spectroscopic study.

Authors:  Joel E Morgan; Ahmet S Vakkasoglu; Janos K Lanyi; Robert B Gennis; Akio Maeda
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

Review 9.  Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.

Authors:  M R Gunner; Junjun Mao; Yifan Song; Jinrang Kim
Journal:  Biochim Biophys Acta       Date:  2006-06-17

10.  Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex.

Authors:  S Saif Hasan; Eiki Yamashita; Danas Baniulis; William A Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-25       Impact factor: 11.205

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