Literature DB >> 15456275

Rapid prediction of chemical metabolism by human UDP-glucuronosyltransferase isoforms using quantum chemical descriptors derived with the electronegativity equalization method.

Michael J Sorich1, Ross A McKinnon, John O Miners, David A Winkler, Paul A Smith.   

Abstract

This study aimed to evaluate in silico models based on quantum chemical (QC) descriptors derived using the electronegativity equalization method (EEM) and to assess the use of QC properties to predict chemical metabolism by human UDP-glucuronosyltransferase (UGT) isoforms. Various EEM-derived QC molecular descriptors were calculated for known UGT substrates and nonsubstrates. Classification models were developed using support vector machine and partial least squares discriminant analysis. In general, the most predictive models were generated with the support vector machine. Combining QC and 2D descriptors (from previous work) using a consensus approach resulted in a statistically significant improvement in predictivity (to 84%) over both the QC and 2D models and the other methods of combining the descriptors. EEM-derived QC descriptors were shown to be both highly predictive and computationally efficient. It is likely that EEM-derived QC properties will be generally useful for predicting ADMET and physicochemical properties during drug discovery.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15456275     DOI: 10.1021/jm0495529

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  2 in total

1.  Predicting Mouse Liver Microsomal Stability with "Pruned" Machine Learning Models and Public Data.

Authors:  Alexander L Perryman; Thomas P Stratton; Sean Ekins; Joel S Freundlich
Journal:  Pharm Res       Date:  2015-09-28       Impact factor: 4.200

2.  High-quality and universal empirical atomic charges for chemoinformatics applications.

Authors:  Stanislav Geidl; Tomáš Bouchal; Tomáš Raček; Radka Svobodová Vařeková; Václav Hejret; Aleš Křenek; Ruben Abagyan; Jaroslav Koča
Journal:  J Cheminform       Date:  2015-12-02       Impact factor: 5.514

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.