Literature DB >> 15455136

Deoxyribozymes: DNA catalysts for bioorganic chemistry.

Scott K Silverman1.   

Abstract

Deoxyribozymes are DNA molecules with catalytic activity. For historical and practical reasons, essentially all reported deoxyribozymes catalyze reactions of nucleic acid substrates, although this is probably not a fundamental limitation. In vitro selection strategies have been used to identify many deoxyribozymes that catalyze RNA cleavage, RNA and DNA ligation, and a variety of covalent modification reactions of nucleic acid substrates. Many deoxyribozymes are capable of catalysis with substantial rate enhancements reaching up to 10(10)-fold over background, and their very high selectivities would often be difficult or impossible to achieve using traditional organic synthesis approaches. This report summarizes the current utility and potential future applications of deoxyribozymes from the bioorganic chemistry perspective. Copyright 2004 The Royal Society of Chemistry

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Year:  2004        PMID: 15455136     DOI: 10.1039/B411910J

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  16 in total

1.  Zn2+-dependent deoxyribozymes that form natural and unnatural RNA linkages.

Authors:  Kelly A Hoadley; Whitney E Purtha; Amanda C Wolf; Amber Flynn-Charlebois; Scott K Silverman
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

Review 2.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

3.  Parallel selections in vitro reveal a preference for 2'-5' RNA ligation upon deoxyribozyme-mediated opening of a 2',3'-cyclic phosphate.

Authors:  Daniel R Semlow; Scott K Silverman
Journal:  J Mol Evol       Date:  2005-06-30       Impact factor: 2.395

4.  Adenosine is inherently favored as the branch-site RNA nucleotide in a structural context that resembles natural RNA splicing.

Authors:  Elena Zelin; Yangming Wang; Scott K Silverman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

Review 5.  Combating small molecule environmental contaminants: detection and sequestration using functional nucleic acids.

Authors:  Aimee A Sanford; Brea A Manuel; Misael A Romero-Reyes; Jennifer M Heemstra
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

6.  Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme.

Authors:  Srinivas A Kandadai; Yingfu Li
Journal:  Nucleic Acids Res       Date:  2006-01-03       Impact factor: 16.971

Review 7.  In vitro selection, characterization, and application of deoxyribozymes that cleave RNA.

Authors:  Scott K Silverman
Journal:  Nucleic Acids Res       Date:  2005-11-11       Impact factor: 16.971

8.  A deoxyribozyme that synthesizes 2',5'-branched RNA with any branch-site nucleotide.

Authors:  Elizabeth D Pratico; Yangming Wang; Scott K Silverman
Journal:  Nucleic Acids Res       Date:  2005-06-20       Impact factor: 16.971

Review 9.  Recent Progress in Nucleic Acid Aptamer-Based Biosensors and Bioassays.

Authors:  Wendy Mok; Yingfu Li
Journal:  Sensors (Basel)       Date:  2008-11-07       Impact factor: 3.576

Review 10.  Looked at life from both sides now.

Authors:  Jillian E Smith; Allisandra K Mowles; Anil K Mehta; David G Lynn
Journal:  Life (Basel)       Date:  2014-12-11
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