Literature DB >> 15454413

arrayMagic: two-colour cDNA microarray quality control and preprocessing.

Andreas Buness1, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka.   

Abstract

UNLABELLED: arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data. The automated analysis pipeline comprises data import, normalization, replica merging, quality diagnostics and data export. The script-based processing combines reproducibility and flexibility at high-throughput and provides quality-assured and preprocessed microarray data to high-level follow-up analysis. AVAILABILITY: The R package arrayMagic is available with BSD license at http://www.bioconductor.org CONTACT: a.buness@dkfz.de SUPPLEMENTARY INFORMATION: The package contains documentation in the form of manual pages and a vignette with a guided tour of a typical workflow.

Mesh：

Year:  2004        PMID： 15454413     DOI： 10.1093/bioinformatics/bti052

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  19 in total

1.  A viral microRNA functions as an orthologue of cellular miR-155.

Authors:  Eva Gottwein; Neelanjan Mukherjee; Christoph Sachse; Corina Frenzel; William H Majoros; Jen-Tsan A Chi; Ravi Braich; Muthiah Manoharan; Jürgen Soutschek; Uwe Ohler; Bryan R Cullen
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

2.  The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.

Authors:  Charles J Baxter; Henning Redestig; Nicolas Schauer; Dirk Repsilber; Kiran R Patil; Jens Nielsen; Joachim Selbig; Junli Liu; Alisdair R Fernie; Lee J Sweetlove
Journal:  Plant Physiol       Date:  2006-11-22       Impact factor: 8.340

3.  Tissue type-specific expression of the dsRNA-binding protein 76 and genome-wide elucidation of its target mRNAs.

Authors:  Valentina Neplioueva; Elena Y Dobrikova; Neelanjan Mukherjee; Jack D Keene; Matthias Gromeier
Journal:  PLoS One       Date:  2010-07-23       Impact factor: 3.240

4.  Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets.

Authors:  Adam R Morris; Neelanjan Mukherjee; Jack D Keene
Journal:  Mol Cell Biol       Date:  2008-04-14       Impact factor: 4.272

5.  Identification of cellular targets for the human papillomavirus E6 and E7 oncogenes by RNA interference and transcriptome analyses.

Authors:  Ruprecht Kuner; Markus Vogt; Holger Sultmann; Andreas Buness; Susanne Dymalla; Julia Bulkescher; Mark Fellmann; Karin Butz; Annemarie Poustka; Felix Hoppe-Seyler
Journal:  J Mol Med (Berl)       Date:  2007-06-23       Impact factor: 4.599

6.  The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations.

Authors:  Dan Tulpan; Luc Belliveau; Serge Léger
Journal:  Bioinformation       Date:  2010-02-28

7.  Coordinated posttranscriptional mRNA population dynamics during T-cell activation.

Authors:  Neelanjan Mukherjee; Patrick J Lager; Matthew B Friedersdorf; Marshall A Thompson; Jack D Keene
Journal:  Mol Syst Biol       Date:  2009-07-28       Impact factor: 11.429

8.  Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas.

Authors:  Frank Westermann; Daniel Muth; Axel Benner; Tobias Bauer; Kai-Oliver Henrich; André Oberthuer; Benedikt Brors; Tim Beissbarth; Jo Vandesompele; Filip Pattyn; Barbara Hero; Rainer König; Matthias Fischer; Manfred Schwab
Journal:  Genome Biol       Date:  2008-10-13       Impact factor: 13.583

9.  GATA factors in human neuroblastoma: distinctive expression patterns in clinical subtypes.

Authors:  V Hoene; M Fischer; A Ivanova; T Wallach; F Berthold; C Dame
Journal:  Br J Cancer       Date:  2009-08-25       Impact factor: 7.640

10.  Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer.

Authors:  Nicole Chui Pressinotti; Helmut Klocker; Georg Schäfer; Van-Duc Luu; Markus Ruschhaupt; Ruprecht Kuner; Eberhard Steiner; Annemarie Poustka; Georg Bartsch; Holger Sültmann
Journal:  Mol Cancer       Date:  2009-12-27       Impact factor: 27.401
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.