Literature DB >> 15449934

Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c.

Michael W Clarkson1, Andrew L Lee.   

Abstract

Long-range interactions are fundamental to protein behaviors such as cooperativity and allostery. In an attempt to understand the role protein flexibility plays in such interactions, the distribution of local fluctuations in a globular protein was monitored in response to localized, nonelectrostatic perturbations. Two valine-to-alanine mutations were introduced into the small serine protease inhibitor eglin c, and the (15)N and (2)H NMR spin relaxation properties of these variants were analyzed in terms of the Lipari-Szabo dynamics formalism and compared to those of the wild type. Significant changes in picosecond to nanosecond dynamics were observed in side chains located as much as 13 A from the point of mutation. Additionally, those residues experiencing altered dynamics appear to form contiguous surfaces within the protein. In the case of V54A, the large-to-small mutation results in a rigidification of connected residues, even though this mutation decreases the global stability. These findings suggest that dynamic perturbations arising from single mutations may propagate away from the perturbed site through networks of interacting side chains. That this is observed in eglin c, a classically nonallosteric protein, suggests that such behavior will be observed in many, if not all, globular proteins. Differences in behavior between the two mutants suggest that dynamic responses will be context-dependent.

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Year:  2004        PMID: 15449934     DOI: 10.1021/bi0494424

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Relation between native ensembles and experimental structures of proteins.

Authors:  Robert B Best; Kresten Lindorff-Larsen; Mark A DePristo; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-07       Impact factor: 11.205

2.  Dynamic coupling and allosteric behavior in a nonallosteric protein.

Authors:  Michael W Clarkson; Steven A Gilmore; Marshall H Edgell; Andrew L Lee
Journal:  Biochemistry       Date:  2006-06-27       Impact factor: 3.162

3.  On the characterization of protein native state ensembles.

Authors:  Amarda Shehu; Lydia E Kavraki; Cecilia Clementi
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

Review 4.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

5.  Exploring the role of structure and dynamics in the function of chymotrypsin inhibitor 2.

Authors:  Matthew J Whitley; Andrew L Lee
Journal:  Proteins       Date:  2010-12-22

6.  Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble.

Authors:  Tong Liu; Steven T Whitten; Vincent J Hilser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

7.  A simple model of backbone flexibility improves modeling of side-chain conformational variability.

Authors:  Gregory D Friedland; Anthony J Linares; Colin A Smith; Tanja Kortemme
Journal:  J Mol Biol       Date:  2008-05-11       Impact factor: 5.469

8.  Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi.

Authors:  Jia Chen; Wei Li; Mingzhu Wang; Guangyu Zhu; Dongqi Liu; Fei Sun; Ning Hao; Xuemei Li; Zihe Rao; Xuejun C Zhang
Journal:  Protein Sci       Date:  2008-05-27       Impact factor: 6.725

9.  Monitoring aromatic picosecond to nanosecond dynamics in proteins via 13C relaxation: expanding perturbation mapping of the rigidifying core mutation, V54A, in eglin c.

Authors:  Joshua A Boyer; Andrew L Lee
Journal:  Biochemistry       Date:  2008-04-05       Impact factor: 3.162

10.  Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions.

Authors:  Christopher Kroboth Materese; Christa Charisse Goldmon; Garegin A Papoian
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

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