Literature DB >> 15447615

Monte Carlo simulations in generalized isobaric-isothermal ensembles.

Hisashi Okumura1, Yuko Okamoto.   

Abstract

We present three generalized isobaric-isothermal ensemble Monte Carlo algorithms, which we refer to as the multibaric-multithermal, multibaric-isothermal, and isobaric-multithermal algorithms. These Monte Carlo simulations perform random walks widely in volume space and/or in potential energy space. From only one simulation run, one can calculate isobaric-isothermal-ensemble averages in wide ranges of pressure and temperature. We demonstrate the effectiveness of these algorithms by applying them to the Lennard-Jones 12-6 potential system with 500 particles.

Year:  2004        PMID: 15447615     DOI: 10.1103/PhysRevE.70.026702

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Molecular dynamics simulations of amyloid-β peptides in heterogeneous environments.

Authors:  Yuhei Tachi; Satoru G Itoh; Hisashi Okumura
Journal:  Biophys Physicobiol       Date:  2022-04-02

Review 2.  Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation.

Authors:  Hisashi Okumura; Satoru G Itoh
Journal:  Molecules       Date:  2022-04-12       Impact factor: 4.927

3.  Conformational populations of ligand-sized molecules by replica exchange molecular dynamics and temperature reweighting.

Authors:  Hisashi Okumura; Emilio Gallicchio; Ronald M Levy
Journal:  J Comput Chem       Date:  2010-05       Impact factor: 3.376

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.