Literature DB >> 15446838

Validated QSAR prediction of OH tropospheric degradation of VOCs: splitting into training-test sets and consensus modeling.

Paola Gramatica1, Pamela Pilutti, Ester Papa.   

Abstract

The rate constant for hydroxyl radical tropospheric degradation of 460 heterogeneous organic compounds is predicted by QSAR modeling. The applied Multiple Linear Regression is based on a variety of theoretical molecular descriptors, selected by the Genetic Algorithms-Variable Subset Selection (GA-VSS) procedure. The models were validated for predictivity by both internal and external validation. For the external validation two splitting approaches, D-optimal Experimental Design and Kohonen Artificial Neural Networks (K-ANN), were applied to the original data set to compare the two methodologies. We emphasize that external validation is the only way to establish a reliable QSAR model for predictive purposes. Predicted data by consensus modeling from different models are also proposed. Copyright 2004 American Chemical Society

Year:  2004        PMID: 15446838     DOI: 10.1021/ci049923u

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  15 in total

1.  Quantitative Structure-Property Relationship for pH-Triggered Drug Release Performance of Acid-Responsive Four/Six-Arms Star Polymeric Micelles.

Authors:  Ran Zhang; Li-Yang Wen; Wen-Sheng Wu; Xiao-Zhe Yuan; Li-Juan Zhang
Journal:  Pharm Res       Date:  2018-12-03       Impact factor: 4.200

2.  QSAR classification of metabolic activation of chemicals into covalently reactive species.

Authors:  Chin Yee Liew; Chuen Pan; Andre Tan; Ke Xin Magneline Ang; Chun Wei Yap
Journal:  Mol Divers       Date:  2012-02-28       Impact factor: 2.943

3.  Estimating persistence of brominated and chlorinated organic pollutants in air, water, soil, and sediments with the QSPR-based classification scheme.

Authors:  T Puzyn; M Haranczyk; N Suzuki; T Sakurai
Journal:  Mol Divers       Date:  2010-04-13       Impact factor: 2.943

4.  Prediction of antiprion activity of therapeutic agents with structure-activity models.

Authors:  Katja Venko; Špela Župerl; Marjana Novič
Journal:  Mol Divers       Date:  2013-09-20       Impact factor: 2.943

5.  Oral LD50 toxicity modeling and prediction of per- and polyfluorinated chemicals on rat and mouse.

Authors:  Barun Bhhatarai; Paola Gramatica
Journal:  Mol Divers       Date:  2010-08-28       Impact factor: 2.943

6.  Mixed learning algorithms and features ensemble in hepatotoxicity prediction.

Authors:  Chin Yee Liew; Yen Ching Lim; Chun Wei Yap
Journal:  J Comput Aided Mol Des       Date:  2011-09-06       Impact factor: 3.686

7.  Using variable and fixed topological indices for the prediction of reaction rate constants of volatile unsaturated hydrocarbons with OH radicals.

Authors:  Matevz Pompe; Marjan Veber; Milan Randić; Alexandru T Balaban
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

8.  Modeling the reactivities of hydroxyl radical and ozone towards atmospheric organic chemicals using quantitative structure-reactivity relationship approaches.

Authors:  Shikha Gupta; Nikita Basant; Dinesh Mohan; Kunwar P Singh
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-04       Impact factor: 4.223

9.  Machine learning of chemical reactivity from databases of organic reactions.

Authors:  Gonçalo V S M Carrera; Sunil Gupta; João Aires-de-Sousa
Journal:  J Comput Aided Mol Des       Date:  2009-05-26       Impact factor: 3.686

10.  Selecting a single model or combining multiple models for microarray-based classifier development?--a comparative analysis based on large and diverse datasets generated from the MAQC-II project.

Authors:  Minjun Chen; Leming Shi; Reagan Kelly; Roger Perkins; Hong Fang; Weida Tong
Journal:  BMC Bioinformatics       Date:  2011-10-18       Impact factor: 3.169

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