Literature DB >> 15446824

Analysis of similarity/dissimilarity of DNA sequences based on nonoverlapping triplets of nucleotide bases.

Bo Liao1, Tian-Ming Wang.   

Abstract

We consider a 6-D representation of triplets of nucleotide bases of DNA sequences. Based on this representation, we outline an approach by constructing a 3-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with the triplets derived from DNA sequences. The examination of similarities/dissimilarities among the coding sequences of the first exon of beta-globin gene of different species illustrates the utility of the approach. Copyright 2004 American Chemical Society

Mesh:

Substances:

Year:  2004        PMID: 15446824     DOI: 10.1021/ci034271f

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  13 in total

1.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

2.  A novel model for DNA sequence similarity analysis based on graph theory.

Authors:  Xingqin Qi; Qin Wu; Yusen Zhang; Eddie Fuller; Cun-Quan Zhang
Journal:  Evol Bioinform Online       Date:  2011-10-04       Impact factor: 1.625

3.  Numerical characterization of DNA sequence based on dinucleotides.

Authors:  Xingqin Qi; Edgar Fuller; Qin Wu; Cun-Quan Zhang
Journal:  ScientificWorldJournal       Date:  2012-04-24

4.  Prediction of high-risk types of human papillomaviruses using statistical model of protein "sequence space".

Authors:  Cong Wang; Yabing Hai; Xiaoqing Liu; Nanfang Liu; Yuhua Yao; Pingan He; Qi Dai
Journal:  Comput Math Methods Med       Date:  2015-04-20       Impact factor: 2.238

5.  Effective Encoding for DNA Sequence Visualization Based on Nucleotide's Ring Structure.

Authors:  A T M Golam Bari; Mst Rokeya Reaz; A K M Tauhidul Islam; Ho-Jin Choi; Byeong-Soo Jeong
Journal:  Evol Bioinform Online       Date:  2013-07-07       Impact factor: 1.625

6.  A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks.

Authors:  Jie Zhou; Pianyu Zhong; Tinghui Zhang
Journal:  Evol Bioinform Online       Date:  2016-10-06       Impact factor: 1.625

7.  A Tool Preference Choice Method for RNA Secondary Structure Prediction by SVM with Statistical Tests.

Authors:  Chiou-Yi Hor; Chang-Biau Yang; Chia-Hung Chang; Chiou-Ting Tseng; Hung-Hsin Chen
Journal:  Evol Bioinform Online       Date:  2013-04-14       Impact factor: 1.625

8.  DV-curve representation of protein sequences and its application.

Authors:  Wei Deng; Yihui Luan
Journal:  Comput Math Methods Med       Date:  2014-05-08       Impact factor: 2.238

9.  Similarity/Dissimilarity analysis of protein sequences based on a new spectrum-like graphical representation.

Authors:  Yuhua Yao; Shoujiang Yan; Huimin Xu; Jianning Han; Xuying Nan; Ping-An He; Qi Dai
Journal:  Evol Bioinform Online       Date:  2014-06-12       Impact factor: 1.625

10.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.