Literature DB >> 15388768

Understanding human DNA sequence variation.

K K Kidd1, A J Pakstis, W C Speed, J R Kidd.   

Abstract

Over the past century researchers have identified normal genetic variation and studied that variation in diverse human populations to determine the amounts and distributions of that variation. That information is being used to develop an understanding of the demographic histories of the different populations and the species as a whole, among other studies. With the advent of DNA-based markers in the last quarter century, these studies have accelerated. One of the challenges for the next century is to understand that variation. One component of that understanding will be population genetics. We present here examples of many of the ways these new data can be analyzed from a population perspective using results from our laboratory on multiple individual DNA-based polymorphisms, many clustered in haplotypes, studied in multiple populations representing all major geographic regions of the world. These data support an "out of Africa" hypothesis for human dispersal around the world and begin to refine the understanding of population structures and genetic relationships. We are also developing baseline information against which we can compare findings at different loci to aid in the identification of loci subject, now and in the past, to selection (directional or balancing). We do not yet have a comprehensive understanding of the extensive variation in the human genome, but some of that understanding is coming from population genetics.

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Year:  2004        PMID: 15388768     DOI: 10.1093/jhered/esh060

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  23 in total

1.  Indications of linkage and association of Gilles de la Tourette syndrome in two independent family samples: 17q25 is a putative susceptibility region.

Authors:  P Paschou; Y Feng; A J Pakstis; W C Speed; M M DeMille; J R Kidd; B Jaghori; R Kurlan; D L Pauls; P Sandor; C L Barr; K K Kidd
Journal:  Am J Hum Genet       Date:  2004-08-09       Impact factor: 11.025

2.  Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.

Authors:  Shigeki Nakagome; Shuhei Mano; Lukasz Kozlowski; Janusz M Bujnicki; Hiroki Shibata; Yasuaki Fukumaki; Judith R Kidd; Kenneth K Kidd; Shoji Kawamura; Hiroki Oota
Journal:  Mol Biol Evol       Date:  2012-01-12       Impact factor: 16.240

3.  Use of autosomal loci for clustering individuals and populations of East Asian origin.

Authors:  Jong-Jin Kim; Paul Verdu; Andrew J Pakstis; William C Speed; Judith R Kidd; Kenneth K Kidd
Journal:  Hum Genet       Date:  2005-07-19       Impact factor: 4.132

4.  Candidate SNPs for a universal individual identification panel.

Authors:  Andrew J Pakstis; William C Speed; Judith R Kidd; Kenneth K Kidd
Journal:  Hum Genet       Date:  2007-02-27       Impact factor: 4.132

5.  Evidence of positive selection on a class I ADH locus.

Authors:  Yi Han; Sheng Gu; Hiroki Oota; Michael V Osier; Andrew J Pakstis; William C Speed; Judith R Kidd; Kenneth K Kidd
Journal:  Am J Hum Genet       Date:  2007-01-30       Impact factor: 11.025

6.  The prion protein gene in humans revisited: lessons from a worldwide resequencing study.

Authors:  Marta Soldevila; Aida M Andrés; Anna Ramírez-Soriano; Tomàs Marquès-Bonet; Francesc Calafell; Arcadi Navarro; Jaume Bertranpetit
Journal:  Genome Res       Date:  2005-12-20       Impact factor: 9.043

7.  Understanding the accuracy of statistical haplotype inference with sequence data of known phase.

Authors:  Aida M Andrés; Andrew G Clark; Lawrence Shimmin; Eric Boerwinkle; Charles F Sing; James E Hixson
Journal:  Genet Epidemiol       Date:  2007-11       Impact factor: 2.135

8.  Haplotype structure and positive selection at TLR1.

Authors:  Christopher Heffelfinger; Andrew J Pakstis; William C Speed; Allison P Clark; Eva Haigh; Rixun Fang; Mahohar R Furtado; Kenneth K Kidd; Michael P Snyder
Journal:  Eur J Hum Genet       Date:  2013-09-04       Impact factor: 4.246

9.  Global patterns of variation in allele and haplotype frequencies and linkage disequilibrium across the CYP2E1 gene.

Authors:  M-Y Lee; N Mukherjee; A J Pakstis; S Khaliq; A Mohyuddin; S Q Mehdi; W C Speed; J R Kidd; K K Kidd
Journal:  Pharmacogenomics J       Date:  2008-07-29       Impact factor: 3.550

10.  The complex global pattern of genetic variation and linkage disequilibrium at catechol-O-methyltransferase.

Authors:  N Mukherjee; K K Kidd; A J Pakstis; W C Speed; H Li; Z Tarnok; C Barta; S L B Kajuna; J R Kidd
Journal:  Mol Psychiatry       Date:  2008-06-24       Impact factor: 15.992

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