Literature DB >> 15388343

Insertion of spliceosomal introns in proto-splice sites: the case of secretory signal peptides.

Hedvig Tordai1, László Patthy.   

Abstract

Analysis of the exon-intron structures of 2208 human genes has revealed that there is a statistically highly significant excess of phase 1 introns in the vicinity of the signal peptide cleavage sites. It is suggested that amino acid sequences surrounding signal peptide cleavage sites are significantly enriched in phase 1 proto-splice sites and this has favored insertion of spliceosomal introns in these sites.

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Year:  2004        PMID: 15388343     DOI: 10.1016/j.febslet.2004.08.045

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

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Authors:  A Ruvinsky; W Ward
Journal:  J Mol Evol       Date:  2006-05-25       Impact factor: 2.395

2.  Intron presence-absence polymorphisms in Daphnia.

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Journal:  Mol Biol Evol       Date:  2008-07-29       Impact factor: 16.240

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Authors:  Abhishek Kumar; Anita Bhandari; Rahul Sinha; Pankaj Goyal; Alessandro Grapputo
Journal:  PLoS One       Date:  2011-08-05       Impact factor: 3.240

4.  Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites.

Authors:  Tobias J Sargeant; Matthias Marti; Elisabet Caler; Jane M Carlton; Ken Simpson; Terence P Speed; Alan F Cowman
Journal:  Genome Biol       Date:  2006-02-20       Impact factor: 13.583

5.  An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes.

Authors:  Henrik Nielsen; Rasmus Wernersson
Journal:  BMC Genomics       Date:  2006-10-11       Impact factor: 3.969

6.  Characterization of newly gained introns in Daphnia populations.

Authors:  Wenli Li; Robert Kuzoff; Chen Khuan Wong; Abraham Tucker; Michael Lynch
Journal:  Genome Biol Evol       Date:  2014-08-14       Impact factor: 3.416

7.  Separate introns gained within short and long soluble peridinin-chlorophyll a-protein genes during radiation of Symbiodinium (Dinophyceae) clade A and B lineages.

Authors:  Jay R Reichman; Peter D Vize
Journal:  PLoS One       Date:  2014-10-17       Impact factor: 3.240

8.  Identification and correction of abnormal, incomplete and mispredicted proteins in public databases.

Authors:  Alinda Nagy; Hédi Hegyi; Krisztina Farkas; Hedvig Tordai; Evelin Kozma; László Bányai; László Patthy
Journal:  BMC Bioinformatics       Date:  2008-08-27       Impact factor: 3.169

9.  Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability.

Authors:  Libia Catalina Salinas Castellanos; Jacques Chomilier; Jorge Hernández-Torres
Journal:  BMC Genomics       Date:  2015-08-04       Impact factor: 3.969

10.  Insights into the Evolution of a Snake Venom Multi-Gene Family from the Genomic Organization of Echis ocellatus SVMP Genes.

Authors:  Libia Sanz; Juan J Calvete
Journal:  Toxins (Basel)       Date:  2016-07-12       Impact factor: 4.546

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