Literature DB >> 15386748

Systematic and random errors in ion affinities and activation entropies from the extended kinetic method.

Kent M Ervin1, P B Armentrout.   

Abstract

An evaluation of the extended kinetic method with full entropy analysis was conducted using RRKM theory to simulate data for collision-induced dissociation under single-collision conditions. A rigorous method for analyzing kinetic method data, orthogonal distance regression, is introduced and compared with previous methods in the literature. The results demonstrate that the use of the extended kinetic method is definitely superior to the standard kinetic method, but final ion affinities and activation entropies differ intrinsically from the correct values. Considering the effects of both systematic and random error in Monte Carlo simulations of the full entropy analysis, error distributions of +/-4 to +/-12 kJ mol(-1) for ion affinities and of +/-9 to +/-30 J mol(-1) K(-1) for activation entropy differences are found (+/-2 standard deviations of the sample populations). The systematic errors in ion affinities are larger for systems with large activation entropy differences. These uncertainties do not include any error in the absolute calibration of the reference ion affinity scale. We argue that application of an empirical correction factor is inadvisable.

Year:  2004        PMID: 15386748     DOI: 10.1002/jms.682

Source DB:  PubMed          Journal:  J Mass Spectrom        ISSN: 1076-5174            Impact factor:   1.982


  11 in total

1.  Gas-phase acid-base properties of melamine and cyanuric acid.

Authors:  Sumit Mukherjee; Jianhua Ren
Journal:  J Am Soc Mass Spectrom       Date:  2010-06-11       Impact factor: 3.109

2.  Determination of the gas-phase acidities of cysteine-polyalanine peptides using the extended kinetic method.

Authors:  John P Tan; Jianhua Ren
Journal:  J Am Soc Mass Spectrom       Date:  2006-10-24       Impact factor: 3.109

3.  Revising the proton affinity scale of the naturally occurring alpha-amino acids.

Authors:  Christian Bleiholder; Sándor Suhai; Béla Paizs
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-10       Impact factor: 3.109

4.  Proton affinity of beta-oxalylaminoalanine (BOAA): incorporation of direct entropy correction into the single-reference kinetic method.

Authors:  Joshua J Wind; Lindsay Papp; Maria Happel; Karen Hahn; Erica J Andriole; John C Poutsma
Journal:  J Am Soc Mass Spectrom       Date:  2005-07       Impact factor: 3.109

5.  A comparison of the gas phase acidities of phospholipid headgroups: experimental and computational studies.

Authors:  Michael C Thomas; Todd W Mitchell; Stephen J Blanksby
Journal:  J Am Soc Mass Spectrom       Date:  2005-04-26       Impact factor: 3.109

6.  Critical evaluation of kinetic method measurements: possible origins of nonlinear effects.

Authors:  Sandrine Bourgoin-Voillard; Carlos Afonso; Denis Lesage; Emilie-Laure Zins; Jean-Claude Tabet; P B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2013-02-07       Impact factor: 3.109

7.  Can cluster structure affect kinetic method measurements? The curious case of glutamic acid's gas-phase acidity.

Authors:  Francoise Fournier; Carlos Afonso; Adelaide E Fagin; Scott Gronert; Jean-Claude Tabet
Journal:  J Am Soc Mass Spectrom       Date:  2008-08-07       Impact factor: 3.109

8.  Estimation of gas-phase acidities of deoxyribonucleosides: an experimental and theoretical study.

Authors:  Sangeeta Kumari; Chebrolu Lavanya Devi; Sripadi Prabhakar; Kotamarthi Bhanuprakash; Mariappanadar Vairamani
Journal:  J Am Soc Mass Spectrom       Date:  2009-09-30       Impact factor: 3.109

9.  Stereochemical effects during [M-H]- dissociations of epimeric 11-OH-17beta-estradiols and distant electronic effects of substituents at C(11) position on gas phase acidity.

Authors:  Sandrine Bourgoin-Voillard; Emilie-Laure Zins; Françoise Fournier; Yves Jacquot; Carlos Afonso; Claude Pèpe; Guy Leclercq; Jean-Claude Tabet
Journal:  J Am Soc Mass Spectrom       Date:  2009-09-03       Impact factor: 3.109

10.  Gas-phase acidities of cysteine-polyglycine peptides: the effect of the cysteine position.

Authors:  Kiran Kumar Morishetti; Betty De Suan Huang; Jessica Marney Yates; Jianhua Ren
Journal:  J Am Soc Mass Spectrom       Date:  2009-12-28       Impact factor: 3.109

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.