Literature DB >> 1538396

Intramolecular dG.dG.dC triplex detected in Escherichia coli cells.

Y Kohwi1, S R Malkhosyan, T Kohwi-Shigematsu.   

Abstract

The formation of an intramolecular dG.dG.dC triplex in Escherichia coli cells is demonstrated at single-base resolution. The intramolecular dG.dG.dC triplex structure was probed in situ for E. coli cells containing plasmid DNAs with varying lengths of poly(dG).poly(dC) tracts employing chloroacetaldehyde. This chemical probe reacts specifically with unpaired DNA bases. The triplex structure formed with the poly(dG).poly(dC) tracts of 35 and 44 base-pairs, but not with 25 base-pairs. The triplex was detected only one to two hours after the chloramphenicol treatment: the period at which the extracted plasmid DNA revealed the maximal superhelical density.

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Year:  1992        PMID: 1538396     DOI: 10.1016/0022-2836(92)90242-c

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

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Journal:  Inflammation       Date:  2002-08       Impact factor: 4.092

2.  Transcriptionally driven cruciform formation in vivo.

Authors:  A Dayn; S Malkhosyan; S M Mirkin
Journal:  Nucleic Acids Res       Date:  1992-11-25       Impact factor: 16.971

3.  Transcription through a simple DNA repeat blocks replication elongation.

Authors:  M M Krasilnikova; G M Samadashwily; A S Krasilnikov; S M Mirkin
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Review 4.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

5.  Divalent transition metal cations counteract potassium-induced quadruplex assembly of oligo(dG) sequences.

Authors:  S W Blume; V Guarcello; W Zacharias; D M Miller
Journal:  Nucleic Acids Res       Date:  1997-02-01       Impact factor: 16.971

6.  Unwinding of the third strand of a DNA triple helix, a novel activity of the SV40 large T-antigen helicase.

Authors:  V Kopel; A Pozner; N Baran; H Manor
Journal:  Nucleic Acids Res       Date:  1996-01-15       Impact factor: 16.971

7.  High resolution mapping of E.coli transcription elongation complex in situ reveals protein interactions with the non-transcribed strand.

Authors:  M Guérin; M Leng; A R Rahmouni
Journal:  EMBO J       Date:  1996-10-01       Impact factor: 11.598

8.  Purification of an oligo(dG).oligo(dC)-binding sea urchin nuclear protein, suGF1: a family of G-string factors involved in gene regulation during development.

Authors:  J Hapgood; D Patterton
Journal:  Mol Cell Biol       Date:  1994-02       Impact factor: 4.272

9.  suGF1 binds in the major groove of its oligo(dG).oligo(dC) recognition sequence and is excluded by a positioned nucleosome core.

Authors:  D Patterton; J Hapgood
Journal:  Mol Cell Biol       Date:  1994-02       Impact factor: 4.272

10.  Intramolecular triplex potential sequence within a gene down regulates its expression in vivo.

Authors:  P S Sarkar; S K Brahmachari
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

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