Literature DB >> 15383216

Bioinformatics software resources.

Don Gilbert1.   

Abstract

This review looks at internet archives, repositories and lists for obtaining popular and useful biology and bioinformatics software. Resources include collections of free software, services for the collaborative development of new programs, software news media and catalogues of links to bioinformatics software and web tools. Problems with such resources arise from needs for continued curator effort to collect and update these, combined with less than optimal community support, funding and collaboration. Despite some problems, the available software repositories provide needed public access to many tools that are a foundation for analyses in bioscience research efforts.

Mesh:

Year:  2004        PMID: 15383216     DOI: 10.1093/bib/5.3.300

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  11 in total

1.  PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling.

Authors:  Jayadev Joshi; Daniel Blankenberg
Journal:  BMC Bioinformatics       Date:  2022-05-28       Impact factor: 3.307

2.  A simple click by click protocol to perform docking: AutoDock 4.2 made easy for non-bioinformaticians.

Authors:  Syed Mohd Danish Rizvi; Shazi Shakil; Mohd Haneef
Journal:  EXCLI J       Date:  2013-09-23       Impact factor: 4.068

3.  xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

Authors:  Shannon D Schlueter; Matthew D Wilkerson; Qunfeng Dong; Volker Brendel
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

4.  Secure encapsulation and publication of biological services in the cloud computing environment.

Authors:  Weizhe Zhang; Xuehui Wang; Bo Lu; Tai-hoon Kim
Journal:  Biomed Res Int       Date:  2013-09-01       Impact factor: 3.411

Review 5.  Phenotypic and Genotypic Eligible Methods for Salmonella Typhimurium Source Tracking.

Authors:  Rafaela G Ferrari; Pedro H N Panzenhagen; Carlos A Conte-Junior
Journal:  Front Microbiol       Date:  2017-12-22       Impact factor: 5.640

6.  A survey of the availability of primary bioinformatics web resources.

Authors:  Trias Thireou; George Spyrou; Vassilis Atlamazoglou
Journal:  Genomics Proteomics Bioinformatics       Date:  2007-02       Impact factor: 7.691

Review 7.  Bioinformatics Accelerates the Major Tetrad: A Real Boost for the Pharmaceutical Industry.

Authors:  Tapan Behl; Ishnoor Kaur; Aayush Sehgal; Sukhbir Singh; Saurabh Bhatia; Ahmed Al-Harrasi; Gokhan Zengin; Elena Emilia Babes; Ciprian Brisc; Manuela Stoicescu; Mirela Marioara Toma; Cristian Sava; Simona Gabriela Bungau
Journal:  Int J Mol Sci       Date:  2021-06-08       Impact factor: 5.923

8.  A Survey of Bioinformatics Database and Software Usage through Mining the Literature.

Authors:  Geraint Duck; Goran Nenadic; Michele Filannino; Andy Brass; David L Robertson; Robert Stevens
Journal:  PLoS One       Date:  2016-06-22       Impact factor: 3.240

9.  Quantifying differences in cell line population dynamics using CellPD.

Authors:  Edwin F Juarez; Roy Lau; Samuel H Friedman; Ahmadreza Ghaffarizadeh; Edmond Jonckheere; David B Agus; Shannon M Mumenthaler; Paul Macklin
Journal:  BMC Syst Biol       Date:  2016-09-21

10.  Deep learning to predict the lab-of-origin of engineered DNA.

Authors:  Alec A K Nielsen; Christopher A Voigt
Journal:  Nat Commun       Date:  2018-08-07       Impact factor: 14.919

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