Literature DB >> 15382923

The escape process of carbon monoxide from myoglobin to solution at physiological temperature.

Yasutaka Nishihara1, Masaaki Sakakura, Yoshifumi Kimura, Masahide Terazima.   

Abstract

The carbon monoxide (CO) docking sites involved in the ligand escape process from the iron atom in hem of myoglobin (Mb) to solution at physiological temperature were studied on the basis of the effect of xenon (Xe) on the ligand escape rate by the transient grating (TG) technique. The TG method provides a direct measurement of the changes in molecular volume. The apparent CO escaping rate and the volume contraction increase with increasing Xe pressure. The pressure dependence of the rate is consistent with that of the Xe population at the Xe(1) site. This result clearly shows that CO is trapped at the Xe(1) site before escaping to solvent in a Xe-free solution at room temperature. It is shown that only CO but not the trapped Xe is released by the photoexcitation of the Xe-trapped MbCO. A dissociation scheme is proposed to explain the enhancement of the escaping rate by the presence of Xe(1). There are two branches for the CO escaping pathway. The dominant part of the dissociated CO escapes to the solvent through the Xe(1) trapping site under the Xe-free condition, and there are at least three intermediate states along this pathway. When a Xe atom blocks the Xe(1) site, the CO escapes through another route.

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Year:  2004        PMID: 15382923     DOI: 10.1021/ja038877w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

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2.  Dynamic features of carboxy cytoglobin distal mutants investigated by molecular dynamics simulations.

Authors:  Cong Zhao; Weihong Du
Journal:  J Biol Inorg Chem       Date:  2016-02-03       Impact factor: 3.358

3.  Studying reactive processes with classical dynamics: rebinding dynamics in MbNO.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

4.  Tetramer formation kinetics in the signaling state of AppA monitored by time-resolved diffusion.

Authors:  Partha Hazra; Keiichi Inoue; Wouter Laan; Klaas J Hellingwerf; Masahide Terazima
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

5.  Full kinetics of CO entry, internal diffusion, and exit in myoglobin from transition-path theory simulations.

Authors:  Tang-Qing Yu; Mauro Lapelosa; Eric Vanden-Eijnden; Cameron F Abrams
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

6.  Charge stabilization in reaction center protein investigated by optical heterodyne detected transient grating spectroscopy.

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Journal:  Eur Biophys J       Date:  2008-03-11       Impact factor: 1.733

7.  Solution 1H NMR study of the accommodation of the side chain of n-butyl-etiohemin-I incorporated into the active site of cyano-metmyoglobin.

Authors:  Vasyl Bondarenko; Jingtao Wang; Heather Kalish; Alan L Balch; Gerd N La Mar
Journal:  J Biol Inorg Chem       Date:  2005-04-09       Impact factor: 3.358

8.  Protein collective motions coupled to ligand migration in myoglobin.

Authors:  Yasutaka Nishihara; Shigeki Kato; Shigehiko Hayashi
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

9.  Sub-100-ps structural dynamics of horse heart myoglobin probed by time-resolved X-ray solution scattering.

Authors:  Key Young Oang; Kyung Hwan Kim; Junbeom Jo; Youngmin Kim; Jong Goo Kim; Tae Wu Kim; Sunhong Jun; Jeongho Kim; Hyotcherl Ihee
Journal:  Chem Phys       Date:  2014-10-17       Impact factor: 2.348

10.  Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin.

Authors:  Jory Z Ruscio; Deept Kumar; Maulik Shukla; Michael G Prisant; T M Murali; Alexey V Onufriev
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-01       Impact factor: 11.205

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