Literature DB >> 15382922

Thermodynamics of binding of D-galactose and deoxy derivatives thereof to the L-arabinose-binding protein.

Antonio Hernandez Daranas1, Hiroki Shimizu, Steve W Homans.   

Abstract

We report the thermodynamics of binding of d-galactose and deoxy derivatives thereof to the arabinose binding protein (ABP). The "intrinsic" (solute-solute) free energy of binding DeltaG degrees (int) at 308 K for the 1-, 2-, 3-, and 6-hydroxyl groups of galactose is remarkably constant (approximately -30 kJ/mol), despite the fact that each hydroxyl group subtends different numbers of hydrogen bonds in the complex. The substantially unfavorable enthalpy of binding (approximately 30 kJ/mol) of 1-deoxygalactose, 2-deoxygalactose, and 3-deoxygalactose in comparison with galactose, cannot be readily accounted for by differences in solvation, suggesting that solute-solute hydrogen bonds are enthalpically significantly more favorable than solute-solvent hydrogen bonds. In contrast, the substantially higher affinity for 2-deoxygalactose in comparison with either 1-deoxygalactose or 3-deoxygalactose derives from differences in the solvation free energies of the free ligands.

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Year:  2004        PMID: 15382922     DOI: 10.1021/ja048054m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

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2.  Applying Pose Clustering and MD Simulations To Eliminate False Positives in Molecular Docking.

Authors:  Spandana Makeneni; David F Thieker; Robert J Woods
Journal:  J Chem Inf Model       Date:  2018-03-09       Impact factor: 4.956

Review 3.  Glycosidase inhibition: assessing mimicry of the transition state.

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4.  Comparison of entropic contributions to binding in a "hydrophilic" versus "hydrophobic" ligand-protein interaction.

Authors:  Neil R Syme; Caitriona Dennis; Agnieszka Bronowska; Guido C Paesen; Steve W Homans
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

5.  Structure based design, stability study and synthesis of the dinitrophenylhydrazone derivative of the oxidation product of lanosterol as a potential P. falciparum transketolase inhibitor and in-vivo antimalarial study.

Authors:  Olatomide A Fadare; Nusrat O Omisore; Oluwaseun B Adegbite; Oladoja A Awofisayo; Frank A Ogundolie; Julius K Adesanwo; Craig A Obafemi
Journal:  In Silico Pharmacol       Date:  2021-06-18

6.  Global changes in local protein dynamics reduce the entropic cost of carbohydrate binding in the arabinose-binding protein.

Authors:  Christopher A MacRaild; Antonio Hernández Daranas; Agnieszka Bronowska; Steve W Homans
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

7.  Origin of heat capacity changes in a "nonclassical" hydrophobic interaction.

Authors:  Neil R Syme; Caitriona Dennis; Simon E V Phillips; Steve W Homans
Journal:  Chembiochem       Date:  2007-09-03       Impact factor: 3.164

8.  Determining the Role of the Aromatic Ring of N-Arylmethyl ent-conduramine F-1 in their Interactions with α-Glucosidases by Saturation Transfer Difference NMR Spectroscopy Experiments.

Authors:  Antonio Hernández Daranas; Sonia Koteich Khatib; Robert Lysek; Pierre Vogel; José A Gavín
Journal:  ChemistryOpen       Date:  2012-01-02       Impact factor: 2.911

  8 in total

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