Literature DB >> 15382921

Altered mechanisms of reactions of phosphate esters bridging a dinuclear metal center.

Tim Humphry1, Marcello Forconi, Nicholas H Williams, Alvan C Hengge.   

Abstract

Kinetic isotope effects in the nucleophile and leaving group were obtained for the reaction of p-nitrophenyl phosphate monoester coordinated to a dinuclear Co(III) complex. The metal complex of the p-nitrophenyl phosphate monoester was found to hydrolyze by a single-step concerted mechanism, with significant nucleophilic participation in the transition state. By contrast, the hydrolysis of uncomplexed p-nitrophenyl phosphate occurs by a very loose transition state with little bond formation to the nucleophile. Previously, the metal complex of the diester methyl-p-nitrophenyl phosphate was found to hydrolyze via a two-step addition-elimination mechanism, in contrast to the concerted hydrolysis mechanism followed by uncomplexed diesters with the p-nitrophenolate leaving group. These results show that coordination to a metal complex can significantly alter the mechanism of phosphoryl transfer.

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Year:  2004        PMID: 15382921     DOI: 10.1021/ja047110g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

Review 1.  Biological phosphoryl-transfer reactions: understanding mechanism and catalysis.

Authors:  Jonathan K Lassila; Jesse G Zalatan; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 2.  Integration of kinetic isotope effect analyses to elucidate ribonuclease mechanism.

Authors:  Michael E Harris; Joseph A Piccirilli; Darrin M York
Journal:  Biochim Biophys Acta       Date:  2015-04-30

3.  Insights into the reaction of protein-tyrosine phosphatase 1B: crystal structures for transition state analogs of both catalytic steps.

Authors:  Tiago A S Brandão; Alvan C Hengge; Sean J Johnson
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

4.  Phosphate forms an unusual tripodal complex with the Fe-Mn center of sweet potato purple acid phosphatase.

Authors:  Gerhard Schenk; Lawrence R Gahan; Lyle E Carrington; Natasa Mitic; Mohsen Valizadeh; Susan E Hamilton; John de Jersey; Luke W Guddat
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-29       Impact factor: 11.205

5.  Kinetic isotope effects for RNA cleavage by 2'-O- transphosphorylation: nucleophilic activation by specific base.

Authors:  Michael E Harris; Qing Dai; Hong Gu; Daniel L Kellerman; Joseph A Piccirilli; Vernon E Anderson
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

Review 6.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

Review 7.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

8.  Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation.

Authors:  Hong Gu; Shuming Zhang; Kin-Yiu Wong; Brian K Radak; Thakshila Dissanayake; Daniel L Kellerman; Qing Dai; Masaru Miyagi; Vernon E Anderson; Darrin M York; Joseph A Piccirilli; Michael E Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-22       Impact factor: 11.205

Review 9.  Identification of catalytic metal ion ligands in ribozymes.

Authors:  John K Frederiksen; Joseph A Piccirilli
Journal:  Methods       Date:  2009-08-03       Impact factor: 3.608

10.  Mechanism and transition state structure of aryl methylphosphonate esters doubly coordinated to a dinuclear cobalt(III) center.

Authors:  Guoqiang Feng; Eric A Tanifum; Harry Adams; Alvan C Hengge; Nicholas H Williams
Journal:  J Am Chem Soc       Date:  2009-09-09       Impact factor: 15.419

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