Literature DB >> 15376590

Level set analysis for leukocyte detection and tracking.

Dipti Prasad Mukherjee1, Nilanjan Ray, Scott T Acton.   

Abstract

We propose a cell detection and tracking solution using image-level sets computed via threshold decomposition. In contrast to existing methods where manual initialization is required to track individual cells, the proposed approach can automatically identify and track multiple cells by exploiting the shape and intensity characteristics of the cells. The capture of the cell boundary is considered as an evolution of a closed curve that maximizes image gradient along the curve enclosing a homogeneous region. An energy functional dependent upon the gradient magnitude along the cell boundary, the region homogeneity within the cell boundary and the spatial overlap of the detected cells is minimized using a variational approach. For tracking between frames, this energy functional is modified considering the spatial and shape consistency of a cell as it moves in the video sequence. The integrated energy functional complements shape-based segmentation with a spatial consistency based tracking technique. We demonstrate that an acceptable, expedient solution of the energy functional is possible through a search of the image-level lines: boundaries of connected components within the level sets obtained by threshold decomposition. The level set analysis can also capture multiple cells in a single frame rather than iteratively computing a single active contour for each individual cell. Results of cell detection using the energy functional approach and the level set approach are presented along with the associated processing time. Results of successful tracking of rolling leukocytes from a number of digital video sequences are reported and compared with the results from a correlation tracking scheme.

Mesh:

Year:  2004        PMID: 15376590     DOI: 10.1109/tip.2003.819858

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  22 in total

1.  Cell segmentation using coupled level sets and graph-vertex coloring.

Authors:  Sumit K Nath; Kannappan Palaniappan; Filiz Bunyak
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

2.  Cell population tracking and lineage construction with spatiotemporal context.

Authors:  Kang Li; Eric D Miller; Mei Chen; Takeo Kanade; Lee E Weiss; Phil G Campbell
Journal:  Med Image Anal       Date:  2008-06-18       Impact factor: 8.545

3.  Migration of isogenic cell lines quantified by dynamic multivariate analysis of single-cell motility.

Authors:  Mark P Harris; Eric Kim; Brandy Weidow; John P Wikswo; Vito Quaranta
Journal:  Cell Adh Migr       Date:  2008 Apr-May       Impact factor: 3.405

4.  A computational approach to detect and segment cytoplasm in muscle fiber images.

Authors:  Yanen Guo; Xiaoyin Xu; Yuanyuan Wang; Zhong Yang; Yaming Wang; Shunren Xia
Journal:  Microsc Res Tech       Date:  2015-04-20       Impact factor: 2.769

5.  A real-time algorithm for the approximation of level-set-based curve evolution.

Authors:  Yonggang Shi; William Clem Karl
Journal:  IEEE Trans Image Process       Date:  2008-05       Impact factor: 10.856

6.  Automated tracking and analysis of phospholipid vesicle contours in phase contrast microscopy images.

Authors:  Peter Usenik; Tomaž Vrtovec; Franjo Pernuš; Boštjan Likar
Journal:  Med Biol Eng Comput       Date:  2011-06-28       Impact factor: 2.602

7.  Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).

Authors:  Amine Merouane; Nicolas Rey-Villamizar; Yanbin Lu; Ivan Liadi; Gabrielle Romain; Jennifer Lu; Harjeet Singh; Laurence J N Cooper; Navin Varadarajan; Badrinath Roysam
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

8.  Maximized Inter-Class Weighted Mean for Fast and Accurate Mitosis Cells Detection in Breast Cancer Histopathology Images.

Authors:  Ramin Nateghi; Habibollah Danyali; Mohammad Sadegh Helfroush
Journal:  J Med Syst       Date:  2017-08-14       Impact factor: 4.460

9.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

10.  Tracking cells in Life Cell Imaging videos using topological alignments.

Authors:  Axel Mosig; Stefan Jäger; Chaofeng Wang; Sumit Nath; Ilker Ersoy; Kannap-pan Palaniappan; Su-Shing Chen
Journal:  Algorithms Mol Biol       Date:  2009-07-16       Impact factor: 1.405

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