Literature DB >> 15374861

tPatternHunter: gapped, fast and sensitive translated homology search.

Derek Kisman1, Ming Li, Bin Ma, Li Wang.   

Abstract

UNLABELLED: New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx. AVAILABILITY: The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/ CONTACT: bma@csd.uwo.ca.

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Year:  2004        PMID: 15374861     DOI: 10.1093/bioinformatics/bti035

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  1 in total

1.  Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.

Authors:  Laurent Noé
Journal:  Algorithms Mol Biol       Date:  2017-02-14       Impact factor: 1.405

  1 in total

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