Literature DB >> 15367489

Establishing the epigenetic status of the Prader-Willi/Angelman imprinting center in the gametes and embryo.

Boris Kantor1, Yotam Kaufman, Kirill Makedonski, Aharon Razin, Ruth Shemer.   

Abstract

The Prader-Willi/Angelman imprinted domain on human chromosome 15q11-q13 is regulated by an imprinting control center (IC) composed of a sequence around the SNRPN promoter (PWS-SRO) and a sequence located 35 kb upstream (AS-SRO). We have previously hypothesized that the primary imprint is established on AS-SRO, which then confers imprinting on PWS-SRO. Here we examine this hypothesis using a transgene that includes both AS-SRO and PWS-SRO sequences and carries out the entire imprinting process. The epigenetic features of this transgene resemble those previously observed on the endogenous locus, thus allowing analyses in the gametes and early embryo. We demonstrate that the primary imprint is in fact established in the gametes, creating a differentially methylated CpG cluster (DMR) on AS-SRO, presumably by an adjacent de novo signal (DNS). The DMR and DNS bind specific proteins: an allele-discrimination protein (ADP) and a de novo methylation protein, respectively. ADP, being a maternal protein, is involved in both the establishment of DMR in the gametes and in its maintenance through implantation when methylation of PWS-SRO on the maternal allele takes place. Importantly, while the AS-SRO is required in the gametes to confer methylation on PWS-SRO, it is dispensable later in development.

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Mesh:

Year:  2004        PMID: 15367489     DOI: 10.1093/hmg/ddh290

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  17 in total

1.  Genetic and epigenetic X-chromosome variations in a parthenogenetic human embryonic stem cell line.

Authors:  Weiqiang Liu; Yifei Yin; Yonghua Jiang; Chaohui Kou; Yumei Luo; Shengchang Huang; Yuhong Zheng; Shaoying Li; Qing Li; Liyuan Guo; Shaorong Gao; Xiaofang Sun
Journal:  J Assist Reprod Genet       Date:  2010-12-15       Impact factor: 3.412

2.  A novel variant of Inpp5f is imprinted in brain, and its expression is correlated with differential methylation of an internal CpG island.

Authors:  Jonathan D Choi; Lara A Underkoffler; Andrew J Wood; Joelle N Collins; Patrick T Williams; Jeffrey A Golden; Eugene F Schuster; Kathleen M Loomes; Rebecca J Oakey
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

3.  Timing and sequence requirements defined for embryonic maintenance of imprinted DNA methylation at Rasgrf1.

Authors:  Rebecca Holmes; Yanjie Chang; Paul D Soloway
Journal:  Mol Cell Biol       Date:  2006-10-09       Impact factor: 4.272

4.  Human embryonic stem cells have a unique epigenetic signature.

Authors:  Marina Bibikova; Eugene Chudin; Bonnie Wu; Lixin Zhou; Eliza Wickham Garcia; Ying Liu; Soojung Shin; Todd W Plaia; Jonathan M Auerbach; Dan E Arking; Rodolfo Gonzalez; Jeremy Crook; Bruce Davidson; Thomas C Schulz; Allan Robins; Aparna Khanna; Peter Sartipy; Johan Hyllner; Padmavathy Vanguri; Smita Savant-Bhonsale; Alan K Smith; Aravinda Chakravarti; Anirban Maitra; Mahendra Rao; David L Barker; Jeanne F Loring; Jian-Bing Fan
Journal:  Genome Res       Date:  2006-08-09       Impact factor: 9.043

5.  Expression of the Snurf-Snrpn IC transcript in the oocyte and its putative role in the imprinting establishment of the mouse 7C imprinting domain.

Authors:  Christophe K Mapendano; Tatsuya Kishino; Kazumi Miyazaki; Shinji Kondo; Koh-Ichiro Yoshiura; Yoshitaka Hishikawa; Takehiko Koji; Norio Niikawa; Tohru Ohta
Journal:  J Hum Genet       Date:  2006-01-21       Impact factor: 3.172

6.  Narrowed abrogation of the Angelman syndrome critical interval on human chromosome 15 does not interfere with epigenotype maintenance in somatic cells.

Authors:  Masayuki Haruta; Makiko Meguro; Yu-Ki Sakamoto; Hidetoshi Hoshiya; Akiko Kashiwagi; Yasuhiko Kaneko; Kohzoh Mitsuya; Mitsuo Oshimura
Journal:  J Hum Genet       Date:  2005-03-03       Impact factor: 3.172

Review 7.  Chromatin mechanisms in genomic imprinting.

Authors:  Slim Kacem; Robert Feil
Journal:  Mamm Genome       Date:  2009-09-17       Impact factor: 2.957

8.  Epigenetic activation of unintegrated HIV-1 genomes by gut-associated short chain fatty acids and its implications for HIV infection.

Authors:  Boris Kantor; Hong Ma; Jennifer Webster-Cyriaque; Paul E Monahan; Tal Kafri
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-20       Impact factor: 11.205

9.  Tracing dynamic changes of DNA methylation at single-cell resolution.

Authors:  Yonatan Stelzer; Chikdu Shakti Shivalila; Frank Soldner; Styliani Markoulaki; Rudolf Jaenisch
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

10.  Protein-binding elements establish in the oocyte the primary imprint of the Prader-Willi/Angelman syndromes domain.

Authors:  Yotam Kaufman; Maya Heled; Jonathan Perk; Aharon Razin; Ruth Shemer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-08       Impact factor: 11.205

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