Literature DB >> 15362103

Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: measurement by fluorescence correlation spectroscopy.

Emmanuel Dauty1, A S Verkman.   

Abstract

Aqueous environments in living cells are crowded, with up to >50 wt% small and macromolecule-size solutes. We investigated quantitatively one important consequence of molecular crowding--reduced diffusion of biologically important solutes. Fluorescence correlation spectroscopy (FCS) was used to measure the diffusion of a series of fluorescent small solutes and macromolecules. In water, diffusion coefficients (D(o)w) were (in cm2/s x 10(-8)): rhodamine green (270), albumin (52), dextrans (75, 10 kDa; 10, 500 kDa), double-stranded DNAs (96, 20 bp; 10, 1 kb; 3.4, 4.5 kb) and polystyrene nanospheres (5.4, 20 nm diameter; 2.3, 100 nm). Aqueous-phase diffusion (Dw) in solutions crowded with Ficoll-70 (0-60 wt%) was reduced by up to 650-fold in an exponential manner: Dw = D(o)w exp (-[C]/[C]exp), where [C]exp is the concentration (in wt%) of crowding agent reducing D(o)w by 63%. FCS data for all solutes and Ficoll-70 concentrations fitted well to a model of single-component, simple (non-anomalous) diffusion. Interestingly [C]exp were nearly identical (11+/-2 wt%, SD) for diffusion of the very different types of macromolecules in Ficoll-70 solutions. However, [C]exp was dependent on the nature of the crowding agent: for example, [C]exp for diffusion of rhodamine green was 30 wt% for glycerol and 16 wt% for 500 kDa dextran. Our results indicate that molecular crowding can greatly reduce aqueous-phase diffusion of biologically important macromolecules, and demonstrate a previously unrecognized insensitivity of crowding effects on the size and characteristics of the diffusing species.

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Year:  2004        PMID: 15362103     DOI: 10.1002/jmr.709

Source DB:  PubMed          Journal:  J Mol Recognit        ISSN: 0952-3499            Impact factor:   2.137


  47 in total

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2.  Dynamic assembly of the exomer secretory vesicle cargo adaptor subunits.

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3.  Anomalous and heterogeneous DNA transport in biomimetic cytoskeleton networks.

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Journal:  Soft Matter       Date:  2020-06-19       Impact factor: 3.679

4.  Anomalous diffusion of proteins due to molecular crowding.

Authors:  Daniel S Banks; Cécile Fradin
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

5.  The vacuole system is a significant intracellular pathway for longitudinal solute transport in basidiomycete fungi.

Authors:  P R Darrah; M Tlalka; A Ashford; S C Watkinson; M D Fricker
Journal:  Eukaryot Cell       Date:  2006-07

6.  Crowding and confinement effects on protein diffusion in vivo.

Authors:  Michael C Konopka; Irina A Shkel; Scott Cayley; M Thomas Record; James C Weisshaar
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

7.  Multiple diffusion mechanisms due to nanostructuring in crowded environments.

Authors:  Hugo Sanabria; Yoshihisa Kubota; M Neal Waxham
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

8.  Significant proportions of nuclear transport proteins with reduced intracellular mobilities resolved by fluorescence correlation spectroscopy.

Authors:  Allison Paradise; Mikhail K Levin; George Korza; John H Carson
Journal:  J Mol Biol       Date:  2006-10-04       Impact factor: 5.469

9.  Fluorescence correlation spectroscopy simulations of photophysical phenomena and molecular interactions: a molecular dynamics/monte carlo approach.

Authors:  James A Dix; Erik F Y Hom; A S Verkman
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

10.  Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm.

Authors:  Douglas Ridgway; Gordon Broderick; Ana Lopez-Campistrous; Melania Ru'aini; Philip Winter; Matthew Hamilton; Pierre Boulanger; Andriy Kovalenko; Michael J Ellison
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

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