Literature DB >> 15359741

Insights from modeling three-dimensional structures of the human potassium and sodium channels.

Kuo-Chen Chou1.   

Abstract

Ion channels allow the movement of ions across cell membranes. Nearly all cells have membranes spanned by ion channels, without which human nerves simply would not work. Ion channels are formed by the aggregation of subunits into a cylindrical configuration that allows a pore, thus forming a kind of tube for ion trafficking. In the present study, the subunits of the human potassium channel are formed by four identical protein chains, whereas for the case of the human sodium channel, the corresponding subunits are actually four hetero-domains formed by the folding of a very large but single protein chain. Since both of the two ion channels are important targets for drug discovery, the 3D (dimensional) structures of their pore regions were developed. On the basis of the 3D models, some important molecular biological mechanisms were discussed that may stimulate novel strategies for therapeutic treatment of the diseases related to ion channel disorders, such as long QT syndrome and chronic pain.

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Year:  2004        PMID: 15359741     DOI: 10.1021/pr049931q

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  9 in total

1.  Predicting drug-target interaction networks based on functional groups and biological features.

Authors:  Zhisong He; Jian Zhang; Xiao-He Shi; Le-Le Hu; Xiangyin Kong; Yu-Dong Cai; Kuo-Chen Chou
Journal:  PLoS One       Date:  2010-03-11       Impact factor: 3.240

2.  iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking.

Authors:  Xuan Xiao; Jian-Liang Min; Pu Wang; Kuo-Chen Chou
Journal:  PLoS One       Date:  2013-08-27       Impact factor: 3.240

3.  iNR-Drug: predicting the interaction of drugs with nuclear receptors in cellular networking.

Authors:  Yue-Nong Fan; Xuan Xiao; Jian-Liang Min; Kuo-Chen Chou
Journal:  Int J Mol Sci       Date:  2014-03-19       Impact factor: 5.923

4.  RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule.

Authors:  Lei Zheng; Shenghui Huang; Nengjiang Mu; Haoyue Zhang; Jiayu Zhang; Yu Chang; Lei Yang; Yongchun Zuo
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

5.  Computational studies for the structure and function of mRPE65.

Authors:  Hao Guo; Chong Zheng; Elizabeth R Gaillard
Journal:  J Theor Biol       Date:  2006-10-07       Impact factor: 2.691

6.  DDESC: Dragon database for exploration of sodium channels in human.

Authors:  Sunil Sagar; Mandeep Kaur; Adam Dawe; Sundararajan Vijayaraghava Seshadri; Alan Christoffels; Ulf Schaefer; Aleksandar Radovanovic; Vladimir B Bajic
Journal:  BMC Genomics       Date:  2008-12-20       Impact factor: 3.969

7.  iEzy-drug: a web server for identifying the interaction between enzymes and drugs in cellular networking.

Authors:  Jian-Liang Min; Xuan Xiao; Kuo-Chen Chou
Journal:  Biomed Res Int       Date:  2013-11-26       Impact factor: 3.411

8.  iCTX-type: a sequence-based predictor for identifying the types of conotoxins in targeting ion channels.

Authors:  Hui Ding; En-Ze Deng; Lu-Feng Yuan; Li Liu; Hao Lin; Wei Chen; Kuo-Chen Chou
Journal:  Biomed Res Int       Date:  2014-06-01       Impact factor: 3.411

9.  PSIONplus: Accurate Sequence-Based Predictor of Ion Channels and Their Types.

Authors:  Jianzhao Gao; Wei Cui; Yajun Sheng; Jishou Ruan; Lukasz Kurgan
Journal:  PLoS One       Date:  2016-04-04       Impact factor: 3.240

  9 in total

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