Literature DB >> 15358270

Weed genomics: new tools to understand weed biology.

Chhandak Basu1, Matthew D Halfhill, Thomas C Mueller, C Neal Stewart.   

Abstract

In spite of the large yield losses that weeds inflict on crops, we know little about the genomics of economically important weed species. Comparative genomics between plant model species and weeds, map-based approaches, genomic sequencing and functional genomics can play vital roles in understanding and dissecting weedy traits of agronomically important weed species that damage crops. Weed genomics research should increase our understanding of the evolution of herbicide resistance and of the basic genetics underlying traits that make weeds a successful group of plants. Here, we propose specific weed candidates as genomic models, including economically important plants that have evolved herbicide resistance on several occasions and weeds with good comparative genomic qualities that can be anchored to the genomics of Arabidopsis and Oryza sativa.

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Year:  2004        PMID: 15358270     DOI: 10.1016/j.tplants.2004.06.003

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  18 in total

1.  Phenotypic selection for dormancy introduced a set of adaptive haplotypes from weedy into cultivated rice.

Authors:  Xing-You Gu; Shahryar F Kianian; Michael E Foley
Journal:  Genetics       Date:  2005-06-21       Impact factor: 4.562

2.  Signatures of adaptation in the weedy rice genome.

Authors:  Lin-Feng Li; Ya-Ling Li; Yulin Jia; Ana L Caicedo; Kenneth M Olsen
Journal:  Nat Genet       Date:  2017-04-03       Impact factor: 38.330

3.  Molecular evolution of shattering loci in U.S. weedy rice.

Authors:  Carrie S Thurber; Michael Reagon; Briana L Gross; Kenneth M Olsen; Yulin Jia; Ana L Caicedo
Journal:  Mol Ecol       Date:  2010-06-24       Impact factor: 6.185

4.  Transformation and segregation of GFP fluorescence and glyphosate resistance in horseweed (Conyza canadensis) hybrids.

Authors:  Matthew D Halfhill; Laura L Good; Chhandak Basu; Jason Burris; Christopher L Main; Thomas C Mueller; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2006-10-06       Impact factor: 4.570

5.  Does an expressed sequence tag (EST) library of Salsola iberica (tumbleweed) help to understand plant responses to environmental stresses?

Authors:  Sam R Zwenger; Rotana Alsaggaf; Chhandak Basu
Journal:  Plant Signal Behav       Date:  2010-11-01

6.  Genetics, novel weapons and rhizospheric microcosmal signaling in the invasion of Phragmites australis.

Authors:  Thimmaraju Rudrappa; Harsh P Bais
Journal:  Plant Signal Behav       Date:  2008-01

7.  Natural variation in gene expression between wild and weedy populations of Helianthus annuus.

Authors:  Zhao Lai; Nolan C Kane; Yi Zou; Loren H Rieseberg
Journal:  Genetics       Date:  2008-08-09       Impact factor: 4.562

8.  De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms.

Authors:  Yanhui Peng; Zhao Lai; Thomas Lane; Madhugiri Nageswara-Rao; Miki Okada; Marie Jasieniuk; Henriette O'Geen; Ryan W Kim; R Douglas Sammons; Loren H Rieseberg; C Neal Stewart
Journal:  Plant Physiol       Date:  2014-09-10       Impact factor: 8.340

9.  Introgression potential between safflower (Carthamus tinctorius) and wild relatives of the genus Carthamus.

Authors:  Marion Mayerhofer; Reinhold Mayerhofer; Deborah Topinka; Jed Christianson; Allen G Good
Journal:  BMC Plant Biol       Date:  2011-03-14       Impact factor: 4.215

10.  The origin and evolution of a recent agricultural weed: population genetic diversity of weedy populations of sunflower (Helianthus annuus L.) in Spain and France.

Authors:  Marie-Hélène Muller; Muriel Latreille; Christine Tollon
Journal:  Evol Appl       Date:  2010-10-26       Impact factor: 5.183

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