Literature DB >> 15357310

Identification of sigmaB-dependent promoters using consensus-directed search of Streptomyces coelicolor genome.

Eun-Jin Lee1, You-Hee Cho, Hyo-Sub Kim, Jung-Hye Roe.   

Abstract

SigmaB plays an important role in both osmoprotection and proper differentiation in Streptomyces coelicolor A3(2). We searched for candidate members of the sigmaB regulon from the genome database, using the consensus promoter sequence (GNNTN14-16GGGTAC/T). The list consists of 115 genes, and includes all the known sigmaB target genes and many other genes whose functions are related to stress protection and differentiation.

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Year:  2004        PMID： 15357310

Source DB:  PubMed          Journal:  J Microbiol        ISSN： 1225-8873            Impact factor:   3.422


  9 in total

1.  Regulation of sigmaB by an anti- and an anti-anti-sigma factor in Streptomyces coelicolor in response to osmotic stress.

Authors:  Eun-Jin Lee; You-Hee Cho; Hyo-Sub Kim; Bo-Eun Ahn; Jung-Hye Roe
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

2.  The dpsA gene of Streptomyces coelicolor: induction of expression from a single promoter in response to environmental stress or during development.

Authors:  Paul D Facey; Beatrica Sevcikova; Renata Novakova; Matthew D Hitchings; Jason C Crack; Jan Kormanec; Paul J Dyson; Ricardo Del Sol
Journal:  PLoS One       Date:  2011-09-30       Impact factor: 3.240

3.  Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote.

Authors:  Eva Strakova; Alice Zikova; Jiri Vohradsky
Journal:  Nucleic Acids Res       Date:  2013-10-23       Impact factor: 16.971

4.  The Orphan Response Regulator Aor1 Is a New Relevant Piece in the Complex Puzzle of Streptomyces coelicolor Antibiotic Regulatory Network.

Authors:  Sergio Antoraz; Sergio Rico; Héctor Rodríguez; Laura Sevillano; Juan F Alzate; Ramón I Santamaría; Margarita Díaz
Journal:  Front Microbiol       Date:  2017-12-12       Impact factor: 5.640

5.  An Alternative σ Factor, σ8, Controls Avermectin Production and Multiple Stress Responses in Streptomyces avermitilis.

Authors:  Di Sun; Qian Wang; Zhi Chen; Jilun Li; Ying Wen
Journal:  Front Microbiol       Date:  2017-04-24       Impact factor: 5.640

Review 6.  Connecting Metabolic Pathways: Sigma Factors in Streptomyces spp.

Authors:  Di Sun; Cong Liu; Jingrong Zhu; Weijie Liu
Journal:  Front Microbiol       Date:  2017-12-19       Impact factor: 5.640

7.  Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.

Authors:  Salim Charaniya; Sarika Mehra; Wei Lian; Karthik P Jayapal; George Karypis; Wei-Shou Hu
Journal:  Nucleic Acids Res       Date:  2007-10-24       Impact factor: 16.971

Review 8.  The SsgA-like proteins in actinomycetes: small proteins up to a big task.

Authors:  Bjørn A Traag; Gilles P van Wezel
Journal:  Antonie Van Leeuwenhoek       Date:  2008-02-14       Impact factor: 2.271

9.  A sporulation-specific, sigF-dependent protein, SspA, affects septum positioning in Streptomyces coelicolor.

Authors:  Angelos Tzanis; Kate A Dalton; Andrew Hesketh; Chris D den Hengst; Mark J Buttner; Annabelle Thibessard; Gabriella H Kelemen
Journal:  Mol Microbiol       Date:  2013-12-19       Impact factor: 3.501
  9 in total

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