Literature DB >> 15356622

The ring of life provides evidence for a genome fusion origin of eukaryotes.

Maria C Rivera1, James A Lake.   

Abstract

Genomes hold within them the record of the evolution of life on Earth. But genome fusions and horizontal gene transfer seem to have obscured sufficiently the gene sequence record such that it is difficult to reconstruct the phylogenetic tree of life. Here we determine the general outline of the tree using complete genome data from representative prokaryotes and eukaryotes and a new genome analysis method that makes it possible to reconstruct ancient genome fusions and phylogenetic trees. Our analyses indicate that the eukaryotic genome resulted from a fusion of two diverse prokaryotic genomes, and therefore at the deepest levels linking prokaryotes and eukaryotes, the tree of life is actually a ring of life. One fusion partner branches from deep within an ancient photosynthetic clade, and the other is related to the archaeal prokaryotes. The eubacterial organism is either a proteobacterium, or a member of a larger photosynthetic clade that includes the Cyanobacteria and the Proteobacteria.

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Year:  2004        PMID: 15356622     DOI: 10.1038/nature02848

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  148 in total

Review 1.  The falsifiability of the models for the origin of eukaryotes.

Authors:  Matej Vesteg; Juraj Krajčovič
Journal:  Curr Genet       Date:  2011-10-19       Impact factor: 3.886

Review 2.  Biochemistry and evolution of anaerobic energy metabolism in eukaryotes.

Authors:  Miklós Müller; Marek Mentel; Jaap J van Hellemond; Katrin Henze; Christian Woehle; Sven B Gould; Re-Young Yu; Mark van der Giezen; Aloysius G M Tielens; William F Martin
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

Review 3.  The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

Authors:  Simonetta Gribaldo; Anthony M Poole; Vincent Daubin; Patrick Forterre; Céline Brochier-Armanet
Journal:  Nat Rev Microbiol       Date:  2010-10       Impact factor: 60.633

4.  Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function.

Authors:  James A Cotton; James O McInerney
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-17       Impact factor: 11.205

5.  Inferring bacterial genome flux while considering truncated genes.

Authors:  Weilong Hao; G Brian Golding
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

6.  The energetics of genome complexity.

Authors:  Nick Lane; William Martin
Journal:  Nature       Date:  2010-10-21       Impact factor: 49.962

Review 7.  The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data.

Authors:  James McInerney; Davide Pisani; Mary J O'Connell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

8.  The last common ancestor: what's in a name?

Authors:  Luis Delaye; Arturo Becerra; Antonio Lazcano
Journal:  Orig Life Evol Biosph       Date:  2005-12       Impact factor: 1.950

9.  Decoding the genomic tree of life.

Authors:  Anne B Simonson; Jacqueline A Servin; Ryan G Skophammer; Craig W Herbold; Maria C Rivera; James A Lake
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-25       Impact factor: 11.205

10.  Universal sharing patterns in proteomes and evolution of protein fold architecture and life.

Authors:  Gustavo Caetano-Anollés; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

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