Literature DB >> 15356288

Rapid tagging of endogenous mouse genes by recombineering and ES cell complementation of tetraploid blastocysts.

Dewang Zhou1, Jin-Xiang Ren, Thomas M Ryan, N Patrick Higgins, Tim M Townes.   

Abstract

The construction of knockin vectors designed to modify endogenous genes in embryonic stem (ES) cells and the generation of mice from these modified cells is time consuming. The timeline of an experiment from the conception of an idea to the availability of mature mice is at least 9 months. We describe a method in which this timeline is typically reduced to 3 months. Knockin vectors are rapidly constructed from bacterial artificial chromosome clones by recombineering followed by gap-repair (GR) rescue, and mice are rapidly derived by injecting genetically modified ES cells into tetraploid blastocysts. We also describe a tandem affinity purification (TAP)/floxed marker gene plasmid and a GR rescue plasmid that can be used to TAP tag any murine gene. The combination of recombineering and tetraploid blastocyst complementation provides a means for large-scale TAP tagging of mammalian genes.

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Year:  2004        PMID: 15356288      PMCID: PMC519128          DOI: 10.1093/nar/gnh128

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

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2.  An efficient recombination system for chromosome engineering in Escherichia coli.

Authors:  D Yu; H M Ellis; E C Lee; N A Jenkins; N G Copeland; D L Court
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA.

Authors:  E C Lee; D Yu; J Martinez de Velasco; L Tessarollo; D A Swing; D L Court; N A Jenkins; N G Copeland
Journal:  Genomics       Date:  2001-04-01       Impact factor: 5.736

4.  Novel transactivation domain in erythroid Kruppel-like factor (EKLF).

Authors:  K Pandya; D Donze; T M Townes
Journal:  J Biol Chem       Date:  2000-11-22       Impact factor: 5.157

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

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Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

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Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

7.  Hybrid vigor, fetal overgrowth, and viability of mice derived by nuclear cloning and tetraploid embryo complementation.

Authors:  K Eggan; H Akutsu; J Loring; L Jackson-Grusby; M Klemm; W M Rideout; R Yanagimachi; R Jaenisch
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8.  A highly efficient recombineering-based method for generating conditional knockout mutations.

Authors:  Pentao Liu; Nancy A Jenkins; Neal G Copeland
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

9.  A new method for rapidly generating gene-targeting vectors by engineering BACs through homologous recombination in bacteria.

Authors:  Vinicius Cotta-de-Almeida; Susan Schonhoff; Tomoyuki Shibata; Andrew Leiter; Scott B Snapper
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

10.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

Authors:  Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg K Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra G Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

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  18 in total

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Journal:  J Physiol       Date:  2004-12-20       Impact factor: 5.182

3.  Non-random subcellular distribution of variant EKLF in erythroid cells.

Authors:  Karen J Quadrini; Eugenia Gruzglin; James J Bieker
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4.  SRY (sex determining region Y)-box2 (Sox2)/poly ADP-ribose polymerase 1 (Parp1) complexes regulate pluripotency.

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5.  Enhanced genome editing in mammalian cells with a modified dual-fluorescent surrogate system.

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6.  Subcellular transport of EKLF and switch-on of murine adult beta maj globin gene transcription.

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7.  Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation.

Authors:  Andre M Pilon; Subramanian S Ajay; Swathi Ashok Kumar; Laurie A Steiner; Praveen F Cherukuri; Stephen Wincovitch; Stacie M Anderson; James C Mullikin; Patrick G Gallagher; Ross C Hardison; Elliott H Margulies; David M Bodine
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8.  Alterations in expression and chromatin configuration of the alpha hemoglobin-stabilizing protein gene in erythroid Kruppel-like factor-deficient mice.

Authors:  Andre M Pilon; Douglas G Nilson; Dewang Zhou; Jose Sangerman; Tim M Townes; David M Bodine; Patrick G Gallagher
Journal:  Mol Cell Biol       Date:  2006-06       Impact factor: 4.272

Review 9.  EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination.

Authors:  Yvette Y Yien; James J Bieker
Journal:  Mol Cell Biol       Date:  2012-10-22       Impact factor: 4.272

10.  Failure of terminal erythroid differentiation in EKLF-deficient mice is associated with cell cycle perturbation and reduced expression of E2F2.

Authors:  Andre M Pilon; Murat O Arcasoy; Holly K Dressman; Serena E Vayda; Yelena D Maksimova; Jose I Sangerman; Patrick G Gallagher; David M Bodine
Journal:  Mol Cell Biol       Date:  2008-10-13       Impact factor: 4.272

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