Literature DB >> 15355598

Genome-wide RNAi as a route to gene function in Drosophila.

David Kuttenkeuler1, Michael Boutros.   

Abstract

With the sequencing of the human genome and the genomes of most major model organisms completed, the systematic characterisation of gene functions remains a key challenge. During the past few years, RNA interference (RNAi) has become a powerful tool to silence the expression of genes and analyse their loss-of-function phenotype when mutant alleles are not available. Genome-wide RNAi screens against all predicted genes have been successfully used to dissect a variety of biological processes in Caenorhabditis elegans. Recently, a genome-wide library of double-stranded RNAs, that target every gene in the Drosophila genome and that is suitable for high throughput cell-based assays, was published. In this paper, recent advances will be summarised. Screening strategies and applications as a route to comprehensively characterising gene function will be discussed.

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Year:  2004        PMID: 15355598     DOI: 10.1093/bfgp/3.2.168

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  16 in total

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2.  Negative regulation of Drosophila JAK-STAT signalling by endocytic trafficking.

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3.  One hundred years of high-throughput Drosophila research.

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4.  Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants.

Authors:  Ping Xu; Yuanji Zhang; Li Kang; Marilyn J Roossinck; Kirankumar S Mysore
Journal:  Plant Physiol       Date:  2006-08-18       Impact factor: 8.340

5.  Identification of receptor-tyrosine-kinase-signaling target genes reveals receptor-specific activities and pathway branchpoints during Drosophila development.

Authors:  John R Leatherbarrow; Marc S Halfon
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

6.  ImagePlane: an automated image analysis pipeline for high-throughput screens using the planarian Schmidtea mediterranea.

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Review 7.  Insights to transcriptional networks by using high throughput RNAi strategies.

Authors:  Jaakko Mattila; Oscar Puig
Journal:  Brief Funct Genomics       Date:  2009-12-01       Impact factor: 4.241

8.  Second-generation sequencing supply an effective way to screen RNAi targets in large scale for potential application in pest insect control.

Authors:  Yubing Wang; Hao Zhang; Haichao Li; Xuexia Miao
Journal:  PLoS One       Date:  2011-04-11       Impact factor: 3.240

Review 9.  Identification of JAK/STAT pathway regulators--insights from RNAi screens.

Authors:  Patrick Müller; Michael Boutros; Martin P Zeidler
Journal:  Semin Cell Dev Biol       Date:  2008-06-08       Impact factor: 7.727

10.  Drosophila RNAi screen identifies host genes important for influenza virus replication.

Authors:  Linhui Hao; Akira Sakurai; Tokiko Watanabe; Ericka Sorensen; Chairul A Nidom; Michael A Newton; Paul Ahlquist; Yoshihiro Kawaoka
Journal:  Nature       Date:  2008-07-09       Impact factor: 49.962

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