Literature DB >> 15345465

PCR-based identification of hyperthermophilic archaea of the family Thermococcaceae.

Galina B Slobodkina1, Nikolai A Chernyh, Alexander I Slobodkin, Irina V Subbotina, Elizaveta A Bonch-Osmolovskaya, Alexander V Lebedinsky.   

Abstract

A method for rapid detection and identification of hyperthermophilic archaea of the family Thermococcaceae based on PCR amplification of 16S rRNA gene fragments with primers TcPc 173F (5'-TCCCCCATAGGYCTGRGGTACTGGAAGGTC-3') and TcPc 589R (5'-GCCGTGRGATTTCGCCAGGGACTTACGGGC-3') was developed and used for identification of new isolates.

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Year:  2004        PMID： 15345465      PMCID： PMC520901          DOI： 10.1128/AEM.70.9.5701-5703.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  11 in total

1.  The RDP-II (Ribosomal Database Project).

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; R J Farris; G M Garrity; G J Olsen; T M Schmidt; J M Tiedje
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2.  Evidence for the presence of thermophilic Fe(III)-reducing microorganisms in deep-sea hydrothermal vents at 13 degrees N (East Pacific Rise).

Authors:  A Slobodkin; B Campbell; S C. Cary; E Bonch-Osmolovskaya; C Jeanthon
Journal:  FEMS Microbiol Ecol       Date:  2001-07       Impact factor: 4.194

3.  Rooting the archaebacterial tree: the pivotal role of Thermococcus celer in archaebacterial evolution.

Authors:  L Achenbach-Richter; R Gupta; W Zillig; C R Woese
Journal:  Syst Appl Microbiol       Date:  1988       Impact factor: 4.022

4.  Basic local alignment search tool.

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Journal:  Bioorg Khim       Date:  1997-10

7.  Thermococcus gorgonarius sp. nov. and Thermococcus pacificus sp. nov.: heterotrophic extremely thermophilic archaea from New Zealand submarine hot vents.

Authors:  M L Miroshnichenko; G M Gongadze; F A Rainey; A S Kostyukova; A M Lysenko; N A Chernyh; E A Bonch-Osmolovskaya
Journal:  Int J Syst Bacteriol       Date:  1998-01

8.  Carboxydobrachium pacificum gen. nov., sp. nov., a new anaerobic, thermophilic, CO-utilizing marine bacterium from Okinawa Trough.

Authors:  T G Sokolova; J M González; N A Kostrikina; N A Chernyh; T P Tourova; C Kato; E A Bonch-Osmolovskaya; F T Robb
Journal:  Int J Syst Evol Microbiol       Date:  2001-01       Impact factor: 2.747

9.  Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR.

Authors:  M M Huang; N Arnheim; M F Goodman
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

10.  The Archaebacterium Thermococcus celer Represents, a Novel Genus within the Thermophilic Branch of the Archaebacteria.

Authors:  W Zillig; I Holz; D Janekovic; W Schäfer; W D Reiter
Journal:  Syst Appl Microbiol       Date:  1983       Impact factor: 4.022
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  3 in total

1.  Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka.

Authors:  Nikolay A Chernyh; Andrey V Mardanov; Vadim M Gumerov; Margarita L Miroshnichenko; Alexander V Lebedinsky; Alexander Y Merkel; Douglas Crowe; Nikolay V Pimenov; Igor I Rusanov; Nikolay V Ravin; Mary Ann Moran; Elizaveta A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2015-09-08       Impact factor: 2.395

2.  Microbial community in black rust exposed to hot ridge flank crustal fluids.

Authors:  Satoshi Nakagawa; Fumio Inagaki; Yohey Suzuki; Bjørn Olav Steinsbu; Mark Alexander Lever; Ken Takai; Bert Engelen; Yoshihiko Sako; Charles Geoffrey Wheat; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2006-08-21       Impact factor: 4.792

3.  Detection of putatively thermophilic anaerobic methanotrophs in diffuse hydrothermal vent fluids.

Authors:  Alexander Y Merkel; Julie A Huber; Nikolay A Chernyh; Elizaveta A Bonch-Osmolovskaya; Alexander V Lebedinsky
Journal:  Appl Environ Microbiol       Date:  2012-11-26       Impact factor: 4.792
  3 in total

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