Literature DB >> 15342798

Adaptive evolution drives the diversification of zinc-finger binding domains.

Deena Schmidt1, Rick Durrett.   

Abstract

The human genome is estimated to contain 700 zinc-finger genes, which perform many key functions, including regulating transcription. The dramatic increase in the number of these genes as we move from yeast to C. elegans to Drosophila and to humans, as well as the clustered organization of these genes in humans, suggests that gene duplication has played an important role in expanding this family of genes. Using likelihood methods developed by Yang and parsimony methods introduced by Suzuki and Gojobori, we have investigated four clusters of zinc-finger genes on human chromosome 19 and found evidence that positive selection was involved in diversifying the family of zinc-finger binding motifs.

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Year:  2004        PMID: 15342798     DOI: 10.1093/molbev/msh246

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  14 in total

1.  Coevolution of retroelements and tandem zinc finger genes.

Authors:  James H Thomas; Sean Schneider
Journal:  Genome Res       Date:  2011-07-22       Impact factor: 9.043

2.  The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues.

Authors:  Peter Lorenz; Sabine Dietmann; Thomas Wilhelm; Dirk Koczan; Sandra Autran; Sophie Gad; Gaiping Wen; Guohui Ding; Yixue Li; Marie-Françoise Rousseau-Merck; Hans-Juergen Thiesen
Journal:  BMC Genomics       Date:  2010-03-26       Impact factor: 3.969

Review 3.  The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution.

Authors:  Peng Yang; Yixuan Wang; Todd S Macfarlan
Journal:  Trends Genet       Date:  2017-09-19       Impact factor: 11.639

4.  Structural Insights into c-Myc-interacting Zinc Finger Protein-1 (Miz-1) Delineate Domains Required for DNA Scanning and Sequence-specific Binding.

Authors:  Mikaël Bédard; Vincent Roy; Martin Montagne; Pierre Lavigne
Journal:  J Biol Chem       Date:  2016-12-29       Impact factor: 5.157

5.  Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes.

Authors:  Aaron T Hamilton; Stuart Huntley; Mary Tran-Gyamfi; Daniel M Baggott; Laurie Gordon; Lisa Stubbs
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

6.  A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors.

Authors:  Stuart Huntley; Daniel M Baggott; Aaron T Hamilton; Mary Tran-Gyamfi; Shan Yang; Joomyeong Kim; Laurie Gordon; Elbert Branscomb; Lisa Stubbs
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

7.  Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa.

Authors:  Peter L Oliver; Leo Goodstadt; Joshua J Bayes; Zoë Birtle; Kevin C Roach; Nitin Phadnis; Scott A Beatson; Gerton Lunter; Harmit S Malik; Chris P Ponting
Journal:  PLoS Genet       Date:  2009-12-04       Impact factor: 5.917

8.  Structural and dynamical characterization of the Miz-1 zinc fingers 5-8 by solution-state NMR.

Authors:  David Bernard; Mikaël Bédard; Josée Bilodeau; Pierre Lavigne
Journal:  J Biomol NMR       Date:  2013-08-24       Impact factor: 2.835

9.  Adaptive evolution in zinc finger transcription factors.

Authors:  Ryan O Emerson; James H Thomas
Journal:  PLoS Genet       Date:  2009-01-02       Impact factor: 5.917

10.  Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains.

Authors:  Hamsa D Tadepally; Gertraud Burger; Muriel Aubry
Journal:  BMC Evol Biol       Date:  2008-06-18       Impact factor: 3.260

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