Literature DB >> 15342545

Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective.

Sarah Amalia Teichmann1, Reiner Albert Veitia.   

Abstract

Genomic evidence for colocalization of functionally related genes on eukaryote chromosomes is mounting. Here we show that a statistically significant fraction of yeast genes coding for subunits of stable complexes are located within 10-30 kb of each other. Clustering of genes encoding subunits of complexes may ensure better coregulation and maintain the right stoichiometry of complexes upon duplication of chromosomal segments. Copyright 2004 Genetics Society of America

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15342545      PMCID: PMC1471008          DOI: 10.1534/genetics.103.024505

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  13 in total

1.  Relating whole-genome expression data with protein-protein interactions.

Authors:  Ronald Jansen; Dov Greenbaum; Mark Gerstein
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

2.  Exploring the etiology of haploinsufficiency.

Authors:  Reiner A Veitia
Journal:  Bioessays       Date:  2002-02       Impact factor: 4.345

3.  A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression.

Authors:  B A Cohen; R D Mitra; J D Hughes; G M Church
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

4.  Evidence for co-evolution of gene order and recombination rate.

Authors:  Csaba Pál; Laurence D Hurst
Journal:  Nat Genet       Date:  2003-02-10       Impact factor: 38.330

5.  MIPS: a database for genomes and protein sequences.

Authors:  H W Mewes; D Frishman; U Güldener; G Mannhaupt; K Mayer; M Mokrejs; B Morgenstern; M Münsterkötter; S Rudd; B Weil
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.

Authors:  H Ge; Z Liu; G M Church; M Vidal
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

Review 7.  Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits.

Authors:  J A Birchler; U Bhadra; M P Bhadra; D L Auger
Journal:  Dev Biol       Date:  2001-06-15       Impact factor: 3.582

8.  Prevalence of small inversions in yeast gene order evolution.

Authors:  C Seoighe; N Federspiel; T Jones; N Hansen; V Bivolarovic; R Surzycki; R Tamse; C Komp; L Huizar; R W Davis; S Scherer; E Tait; D J Shaw; D Harris; L Murphy; K Oliver; K Taylor; M A Rajandream; B G Barrell; K H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

9.  Yeast genome duplication was followed by asynchronous differentiation of duplicated genes.

Authors:  Rikke B Langkjaer; Paul F Cliften; Mark Johnston; Jure Piskur
Journal:  Nature       Date:  2003-02-20       Impact factor: 49.962

10.  The constraints protein-protein interactions place on sequence divergence.

Authors:  Sarah A Teichmann
Journal:  J Mol Biol       Date:  2002-11-29       Impact factor: 5.469

View more
  29 in total

1.  Gene dosage balance in cellular pathways: implications for dominance and gene duplicability.

Authors:  Reiner A Veitia
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

2.  Novel specificities emerge by stepwise duplication of functional modules.

Authors:  José B Pereira-Leal; Sarah A Teichmann
Journal:  Genome Res       Date:  2005-04       Impact factor: 9.043

3.  Protein complexity, gene duplicability and gene dispensability in the yeast genome.

Authors:  Yeong-Shin Lin; Jenn-Kang Hwang; Wen-Hsiung Li
Journal:  Gene       Date:  2006-09-14       Impact factor: 3.688

Review 4.  Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies.

Authors:  Elzo de Wit; Bas van Steensel
Journal:  Chromosoma       Date:  2008-10-14       Impact factor: 4.316

Review 5.  Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes.

Authors:  Patrick P Edger; J Chris Pires
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

6.  Footprints of optimal protein assembly strategies in the operonic structure of prokaryotes.

Authors:  Jan Ewald; Martin Kötzing; Martin Bartl; Christoph Kaleta
Journal:  Metabolites       Date:  2015-04-28

7.  Selection upon genome architecture: conservation of functional neighborhoods with changing genes.

Authors:  Fátima Al-Shahrour; Pablo Minguez; Tomás Marqués-Bonet; Elodie Gazave; Arcadi Navarro; Joaquín Dopazo
Journal:  PLoS Comput Biol       Date:  2010-10-07       Impact factor: 4.475

8.  The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering.

Authors:  Charles Hall; Fred S Dietrich
Journal:  Genetics       Date:  2007-12       Impact factor: 4.562

9.  Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.

Authors:  Guillaume Blanc; Kenneth H Wolfe
Journal:  Plant Cell       Date:  2004-06-18       Impact factor: 11.277

10.  Properties of untranslated regions of the S. cerevisiae genome.

Authors:  Tamir Tuller; Eytan Ruppin; Martin Kupiec
Journal:  BMC Genomics       Date:  2009-08-22       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.