Literature DB >> 15342246

A comparison of the dynamic behavior of monomeric and dimeric insulin shows structural rearrangements in the active monomer.

Vincent Zoete1, Markus Meuwly, Martin Karplus.   

Abstract

Molecular dynamics (MD) simulations (5-10ns in length) and normal mode analyses were performed for the monomer and dimer of native porcine insulin in aqueous solution; both starting structures were obtained from an insulin hexamer. Several simulations were done to confirm that the results obtained are meaningful. The insulin dimer is very stable during the simulation and remains very close to the starting X-ray structure; the RMS fluctuations calculated from the MD simulation agree with the experimental B-factors. Correlated motions were found within each of the two monomers; they can be explained by persistent non-bonded interactions and disulfide bridges. The correlated motions between residues B24 and B26 of the two monomers are due to non-bonded interactions between the side-chains and backbone atoms. For the isolated monomer in solution, the A chain and the helix of the B chain are found to be stable during 5ns and 10ns MD simulations. However, the N-terminal and the C-terminal parts of the B chain are very flexible. The C-terminal part of the B chain moves away from the X-ray conformation after 0.5-2.5ns and exposes the N-terminal residues of the A chain that are thought to be important for the binding of insulin to its receptor. Our results thus support the hypothesis that, when monomeric insulin is released from the hexamer (or the dimer in our study), the C-terminal end of the monomer (residues B25-B30) is rearranged to allow binding to the insulin receptor. The greater flexibility of the C-terminal part of the beta chain in the B24 (Phe-->Gly) mutant is in accord with the NMR results. The details of the backbone and side-chain motions are presented. The transition between the starting conformation and the more dynamic structure of the monomers is characterized by displacements of the backbone of Phe B25 and Tyr B26; of these, Phe B25 has been implicated in insulin activation.

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Year:  2004        PMID: 15342246     DOI: 10.1016/j.jmb.2004.07.033

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  23 in total

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4.  Equilibrium Ensembles for Insulin Folding from Bias-Exchange Metadynamics.

Authors:  Richa Singh; Rohit Bansal; Anurag Singh Rathore; Gaurav Goel
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

5.  Extending Halogen-based Medicinal Chemistry to Proteins: IODO-INSULIN AS A CASE STUDY.

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Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

6.  Structural analysis of proinsulin hexamer assembly by hydroxyl radical footprinting and computational modeling.

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7.  The Hydration Shell of Monomeric and Dimeric Insulin Studied by Terahertz Time-Domain Spectroscopy.

Authors:  Pengfei Wang; Xiangchao Wang; Liyuan Liu; Hongwei Zhao; Wei Qi; Mingxia He
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9.  Solution structure of a conformationally restricted fully active derivative of the human relaxin-like factor.

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Journal:  Biochemistry       Date:  2008-12-16       Impact factor: 3.162

10.  Contribution of TyrB26 to the Function and Stability of Insulin: STRUCTURE-ACTIVITY RELATIONSHIPS AT A CONSERVED HORMONE-RECEPTOR INTERFACE.

Authors:  Vijay Pandyarajan; Nelson B Phillips; Nischay Rege; Michael C Lawrence; Jonathan Whittaker; Michael A Weiss
Journal:  J Biol Chem       Date:  2016-04-26       Impact factor: 5.157

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