Literature DB >> 15342115

Novel reactions of L-rhamnose isomerase from Pseudomonas stutzeri and its relation with D-xylose isomerase via substrate specificity.

Khim Leang1, Goro Takada, Yoshinori Fukai, Kenji Morimoto, Tom Birger Granström, Ken Izumori.   

Abstract

Escherichia coli strain JM 109 harboring 6 x His-tag L-rhamnose isomerase (L-RhI) from Pseudomonas stutzeri allowed a 20-fold increase in the volumetric yield of soluble enzyme compared to the value for the intrinsic yield. Detailed studies on the substrate specificity of the purified His-tagged protein revealed that it catalyzed previously unknown common and rare aldo/ketotetrose, aldo/ketopentose, and aldo/ketohexose substrates in both D- and L-forms, for instance, erythrose, threose, xylose, lyxose, ribose, glucose, mannose, galactose, altrose, tagatose, sorbose, psicose, and fructose. Using a high enzyme-substrate ratio in extended reactions, the enzyme-catalyzed interconversion reactions from which two different products from one substrate were formed: L-lyxose, L-glucose, L-tagatose and D-allose were isomerized to L-xylulose and L-xylose, L-fructose and L-mannose, L-galactose and L-talose, and D-psicose and D-altrose, in that order. Kinetic studies, however, showed that L-rhamnose with Km and Vmax values of 11 mM and 240 U/mg, respectively, was the most preferred substrate, followed by L-mannose, L-lyxose, D-ribose, and D-allose. Based on the observed catalytic mode of action, these new findings reflected a hitherto undetected interrelation between L-RhI and D-xylose isomerase (D-XI).

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Year:  2004        PMID: 15342115     DOI: 10.1016/j.bbagen.2004.06.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  9 in total

1.  Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri.

Authors:  Hiromi Yoshida; Poonperm Wayoon; Goro Takada; Ken Izumori; Shigehiro Kamitori
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-31

2.  Expression, crystallization and preliminary X-ray crystallographic analysis of cellobiose 2-epimerase from Dictyoglomus turgidum DSM 6724.

Authors:  Tan-Viet Pham; Seung-Hye Hong; Myoung-ki Hong; Ho-Phuong-Thuy Ngo; Deok-Kun Oh; Lin-Woo Kang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

3.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of D-ribose-5-phosphate isomerase from Clostridium thermocellum.

Authors:  Junho Jung; Soo Jin Yeom; Jisun Kim; Jin Kwang Kim; Sampath Natarajan; Yeh Jin Ahn; Sang Boem Lim; Deok Kun Oh; Lin Woo Kang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-30

Review 4.  Enzymes for the biocatalytic production of rare sugars.

Authors:  Koen Beerens; Tom Desmet; Wim Soetaert
Journal:  J Ind Microbiol Biotechnol       Date:  2012-02-14       Impact factor: 3.346

5.  Two-step enzymatic synthesis of 6-deoxy-L-psicose.

Authors:  Liuqing Wen; Kenneth Huang; Yuan Zheng; Junqiang Fang; Shukkoor Muhammed Kondengaden; Peng George Wang
Journal:  Tetrahedron Lett       Date:  2016-07-06       Impact factor: 2.415

6.  Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation.

Authors:  Jing-Jing Liu; Guo-Chang Zhang; Suryang Kwak; Eun Joong Oh; Eun Ju Yun; Kulika Chomvong; Jamie H D Cate; Yong-Su Jin
Journal:  Nat Commun       Date:  2019-03-22       Impact factor: 14.919

7.  Genome-Wide Analysis of Sugar Transporters Identifies the gtsA Gene for Glucose Transportation in Pseudomonas stutzeri A1501.

Authors:  Yaqun Liu; Liguo Shang; Yuhua Zhan; Min Lin; Zhu Liu; Yongliang Yan
Journal:  Microorganisms       Date:  2020-04-19

8.  Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site.

Authors:  Hiromi Yoshida; Akihide Yoshihara; Misa Teraoka; Satoshi Yamashita; Ken Izumori; Shigehiro Kamitori
Journal:  FEBS Open Bio       Date:  2012-12-07       Impact factor: 2.693

9.  Enzymatic synthesis of l-fucose from l-fuculose using a fucose isomerase from Raoultella sp. and the biochemical and structural analyses of the enzyme.

Authors:  In Jung Kim; Do Hyoung Kim; Ki Hyun Nam; Kyoung Heon Kim
Journal:  Biotechnol Biofuels       Date:  2019-12-05       Impact factor: 6.040

  9 in total

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