Literature DB >> 15339918

Identification of crucial histidines involved in carbon-nitrogen triple bond synthesis by aldoxime dehydratase.

Kazunobu Konishi1, Kyoko Ishida, Ken-Ichi Oinuma, Takehiro Ohta, Yoshiteru Hashimoto, Hiroki Higashibata, Teizo Kitagawa, Michihiko Kobayashi.   

Abstract

Aldoxime dehydratase (OxdA), which is a novel heme protein, catalyzes the dehydration of an aldoxime to a nitrile even in the presence of water in the reaction mixture. The combination of site-directed mutagenesis of OxdA (mutation of all conserved histidines in the aldoxime dehydratase superfamily), estimation of the heme contents and specific activities of the mutants, and CD and resonance Raman spectroscopic analyses led to the identification of the proximal and distal histidines in this unique enzyme. The heme contents and CD spectra in the far-UV region of all mutants except for the H299A one were almost identical to those of the wild-type OxdA, whereas the H299A mutant lost the ability of binding heme, demonstrating that His(299) is the proximal histidine. On the other hand, substitution of alanine for His(320) did not affect the overall structure of OxdA but caused loss of its ability of carbon-nitrogen triple bond synthesis and a lower shift of the Fe-C stretching band in the resonance Raman spectrum for the CO-bound form. Furthermore, the pH dependence of the wild-type OxdA closely followed the His protonation curves observed for other proteins. These findings suggest that His(320) is located in the distal heme pocket of OxdA and would donate a proton to the substrate in the aldoxime dehydration mechanism.

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Year:  2004        PMID: 15339918     DOI: 10.1074/jbc.M407223200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  7 in total

1.  Crystal structure of aldoxime dehydratase and its catalytic mechanism involved in carbon-nitrogen triple-bond synthesis.

Authors:  Junpei Nomura; Hiroshi Hashimoto; Takehiro Ohta; Yoshiteru Hashimoto; Koichi Wada; Yoshinori Naruta; Ken-Ichi Oinuma; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

2.  Discovery of a reaction intermediate of aliphatic aldoxime dehydratase involving heme as an active center.

Authors:  Kazunobu Konishi; Takehiro Ohta; Ken-Ichi Oinuma; Yoshiteru Hashimoto; Teizo Kitagawa; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-06       Impact factor: 11.205

3.  Transcriptional regulation of the nitrile hydratase gene cluster in Pseudomonas chlororaphis B23.

Authors:  Toshihide Sakashita; Yoshiteru Hashimoto; Ken-ichi Oinuma; Michihiko Kobayashi
Journal:  J Bacteriol       Date:  2008-04-11       Impact factor: 3.490

4.  X-ray crystal structure of michaelis complex of aldoxime dehydratase.

Authors:  Hitomi Sawai; Hiroshi Sugimoto; Yasuo Kato; Yasuhisa Asano; Yoshitsugu Shiro; Shigetoshi Aono
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

5.  New function of aldoxime dehydratase: Redox catalysis and the formation of an unexpected product.

Authors:  Masatoshi Yamada; Yoshiteru Hashimoto; Takuto Kumano; Seiya Tsujimura; Michihiko Kobayashi
Journal:  PLoS One       Date:  2017-04-14       Impact factor: 3.240

6.  A new on-axis multimode spectrometer for the macromolecular crystallography beamlines of the Swiss Light Source.

Authors:  Robin L Owen; Arwen R Pearson; Alke Meents; Pirmin Boehler; Vincent Thominet; Clemens Schulze-Briese
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

7.  Protein engineering of the aldoxime dehydratase from Bacillus sp. OxB-1 based on a rational sequence alignment approach.

Authors:  Keiko Oike; Jens Sproß; Daisuke Matsui; Yasuhisa Asano; Harald Gröger
Journal:  Sci Rep       Date:  2021-07-12       Impact factor: 4.379

  7 in total

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